Gene annotation
| Transcriptome id | Sobic.001G163600.1 |
|---|---|
| Synonym | Sb01g014300 |
| Functional annotation | WD-40 repeat family protein, putative, expressed |
| UniProt | A0A1Z5S5X9 |
| Pfam | PF00400 |
| Panther DB | PTHR22844 PTHR22844:SF145 |
| NCBI CDD | KOG0271; Notchless-like WD40 repeat-containing protein |
| KEGG Orthology | - |
| Gene Ontology | GO:0005515; protein binding |
Orthologs (automatic annotation)
| TAIR | AT3G18950 : Transducin/WD40 repeat-like superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g42710.1 : WD-40 repeat family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a008064 , Zm00025a016849 , Zm00025a025223 , Zm00025a007383 |
| Brachypodium | KQK13305 , KQK14131 |
| Barley | HORVU4Hr1G012000.5 , HORVU4Hr1G012000.4 , HORVU4Hr1G012000.7 , HORVU4Hr1G012000.6 , HORVU4Hr1G012000.1 , HORVU4Hr1G012000.2 , HORVU4Hr1G012000.9 , HORVU4Hr1G012000.8 , HORVU5Hr1G093830.1 , HORVU4Hr1G012010.4 , HORVU4Hr1G012010.5 , HORVU4Hr1G012010.2 , HORVU4Hr1G012010.3 , HORVU4Hr1G012010.1 , HORVU4Hr1G012000.11 , HORVU4Hr1G012000.10 , HORVU4Hr1G012000.13 , HORVU4Hr1G012000.12 , HORVU4Hr1G012000.14 , HORVU5Hr1G017260.2 , HORVU5Hr1G017260.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G172800 | expressed protein | - |
| 2 | Sobic.007G025900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed | - |
| 3 | Sobic.002G001900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed | - |
| 4 | Sobic.008G097300 | nodulin, putative, expressed | - |
| 5 | Sobic.006G123500 | peptide methionine sulfoxide reductase, putative, expressed | K07304: peptide-methionine (S)-S-oxide reductase |
| 6 | Sobic.004G099700 | receptor-like protein kinase 5 precursor, putative, expressed | - |
| 7 | Sobic.004G063200 | B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed | - |
| 8 | Sobic.006G002900 | zinc finger, C3HC4 type, domain containing protein, expressed | - |
| 9 | Sobic.001G404500 | gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed | K08059: IFI30, interferon, gamma-inducible protein 30 |
| 10 | Sobic.001G448300 | phytosulfokines precursor, putative, expressed | - |
| 11 | Sobic.007G129201 | - | - |
| 12 | Sobic.003G410900 | CRAL/TRIO domain containing protein, expressed | - |
| 13 | Sobic.003G397600 | expressed protein | - |
| 14 | Sobic.008G060300 | transcription factor(PubMedID : 30367619)@WRKY45, expressed | - |
| 15 | Sobic.008G190200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ligA, putative, expressed | - |
| 16 | Sobic.010G130800 | Acyl activating enzyme 1 AAE1 (At)(PubMedID : 27208977)@AMP-binding enzyme, putative, expressed | K00666: fatty-acyl-CoA synthase |
| 17 | Sobic.006G004400 | Similer to the candidate causal gene ZmCCT for Flowerin time QTL(PubMedID : 19822732)@CCT motif family protein, expressed | - |
| 18 | Sobic.001G314400 | OsMADS56 - MADS-box family gene with MIKCc type-box, expressed | - |
| 19 | Sobic.009G023401 | - | - |
| 20 | Sobic.006G052200 | nodulin, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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