Gene annotation
Transcriptome id Sobic.006G002900.1
Synonym Sb06g000460
Functional annotation zinc finger, C3HC4 type, domain containing protein, expressed
UniProt C5YB96
Pfam PF12906
Panther DB PTHR23012 PTHR23012:SF88
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G60580 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os04g01490.1 : zinc finger, C3HC4 type, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a055503
Brachypodium -
Barley HORVU2Hr1G005630.29 , HORVU2Hr1G005630.23 , HORVU2Hr1G005630.22 , HORVU2Hr1G005630.21 , HORVU2Hr1G005630.27 , HORVU2Hr1G005630.26 , HORVU2Hr1G005630.25 , HORVU2Hr1G005630.5 , HORVU2Hr1G005630.7 , HORVU2Hr1G005630.30 , HORVU2Hr1G005630.31 , HORVU2Hr1G005630.8 , HORVU2Hr1G005630.9 , HORVU2Hr1G005630.1 , HORVU2Hr1G005630.12 , HORVU2Hr1G005630.13 , HORVU2Hr1G005630.10 , HORVU2Hr1G005630.16 , HORVU2Hr1G005630.14 , HORVU2Hr1G005630.15 , HORVU2Hr1G005630.18 , HORVU2Hr1G005630.19 , HORVU6Hr1G001690.1 , HORVU6Hr1G001690.8 , HORVU6Hr1G001690.9
Wheat TraesCS2B02G051700 , TraesCS6D02G005100 , TraesCS2A02G039300 , TraesCS6A02G001000 , TraesCS2A02G039300 , TraesCS2D02G037600 , TraesCS2D02G037600 , TraesCS2D02G037600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G267700 receptor protein kinase CLAVATA1 precursor, putative, expressed -
2 Sobic.002G201900 transporter family protein, putative, expressed -
3 Sobic.004G340800 OsFBX70 - F-box domain containing protein, expressed -
4 Sobic.002G200700 expressed protein -
5 Sobic.007G062200 expressed protein -
6 Sobic.010G102800 STELAR K+ outward rectifier(PubMedID : 26465154)@similar to Potassium outward rectifying channel(PubMedID : 29862293)@potassium channel SKOR, putative, expressed -
7 Sobic.008G186400 Leucine-rich repeat transmembrane protein kinase family protein(PubMedID : 26465154)@receptor-like protein kinase HAIKU2 precursor, putative, expressed -
8 Sobic.005G142700 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed -
9 Sobic.003G246200 DUF1645 domain containing protein, putative, expressed -
10 Sobic.003G403500 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
11 Sobic.001G163600 WD-40 repeat family protein, putative, expressed -
12 Sobic.008G190200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ligA, putative, expressed -
13 Sobic.003G397200 - -
14 Sobic.009G016633 - K09422: transcription factor MYB, plant
15 Sobic.010G199900 extracellular ligand-gated ion channel, putative, expressed -
16 Sobic.001G411400 response regulator receiver domain containing protein, expressed K12129: pseudo-response regulator 7
17 Sobic.001G302800 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
18 Sobic.009G172600 Major facilitator superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@NFD4, putative, expressed -
19 Sobic.006G065900 expressed protein -
20 Sobic.003G263001 - -


Gene co-expression network
sample Sobic006G002900 Sobic006G002900 Sobic010G267700 Sobic010G267700 Sobic006G002900--Sobic010G267700 Sobic002G201900 Sobic002G201900 Sobic006G002900--Sobic002G201900 Sobic004G340800 Sobic004G340800 Sobic006G002900--Sobic004G340800 Sobic002G200700 Sobic002G200700 Sobic006G002900--Sobic002G200700 Sobic007G062200 Sobic007G062200 Sobic006G002900--Sobic007G062200 Sobic010G102800 Sobic010G102800 Sobic006G002900--Sobic010G102800 Sobic008G186400 Sobic008G186400 Sobic006G002900--Sobic008G186400 Sobic005G142700 Sobic005G142700 Sobic006G002900--Sobic005G142700 Sobic003G246200 Sobic003G246200 Sobic006G002900--Sobic003G246200 Sobic010G267700--Sobic008G186400 Sobic002G367100 Sobic002G367100 Sobic010G267700--Sobic002G367100 Sobic003G375900 Sobic003G375900 Sobic010G267700--Sobic003G375900 Sobic003G403500 Sobic003G403500 Sobic010G267700--Sobic003G403500 Sobic010G267700--Sobic006G002900 Sobic003G397200 Sobic003G397200 Sobic010G267700--Sobic003G397200 Sobic003G263001 Sobic003G263001 Sobic010G267700--Sobic003G263001 Sobic005G012200 Sobic005G012200 Sobic010G267700--Sobic005G012200 Sobic003G422700 Sobic003G422700 Sobic010G267700--Sobic003G422700 Sobic002G201900--Sobic002G200700 Sobic007G025900 Sobic007G025900 Sobic002G201900--Sobic007G025900 Sobic006G130000 Sobic006G130000 Sobic002G201900--Sobic006G130000 Sobic002G201900--Sobic003G246200 Sobic006G065900 Sobic006G065900 Sobic002G201900--Sobic006G065900 Sobic006G064200 Sobic006G064200 Sobic002G201900--Sobic006G064200 Sobic003G397600 Sobic003G397600 Sobic002G201900--Sobic003G397600 Sobic003G224100 Sobic003G224100 Sobic002G201900--Sobic003G224100 Sobic007G141700 Sobic007G141700 Sobic002G201900--Sobic007G141700 Sobic002G137800 Sobic002G137800 Sobic004G340800--Sobic002G137800 Sobic004G340800--Sobic003G403500 Sobic001G351100 Sobic001G351100 Sobic004G340800--Sobic001G351100 Sobic005G072200 Sobic005G072200 Sobic004G340800--Sobic005G072200 Sobic004G092000 Sobic004G092000 Sobic004G340800--Sobic004G092000 Sobic002G073900 Sobic002G073900 Sobic004G340800--Sobic002G073900 Sobic010G199900 Sobic010G199900 Sobic004G340800--Sobic010G199900 Sobic001G414000 Sobic001G414000 Sobic004G340800--Sobic001G414000 Sobic005G045200 Sobic005G045200 Sobic004G340800--Sobic005G045200 Sobic002G200700--Sobic003G224100 Sobic002G001000 Sobic002G001000 Sobic002G200700--Sobic002G001000 Sobic002G200700--Sobic002G201900 Sobic003G007700 Sobic003G007700 Sobic002G200700--Sobic003G007700 Sobic002G200700--Sobic006G064200 Sobic010G269400 Sobic010G269400 Sobic002G200700--Sobic010G269400 Sobic002G136100 Sobic002G136100 Sobic002G200700--Sobic002G136100 Sobic002G200700--Sobic006G130000 Sobic006G258700 Sobic006G258700 Sobic002G200700--Sobic006G258700 Sobic001G498000 Sobic001G498000 Sobic007G062200--Sobic001G498000 Sobic003G334000 Sobic003G334000 Sobic007G062200--Sobic003G334000 Sobic003G051000 Sobic003G051000 Sobic007G062200--Sobic003G051000 Sobic010G251300 Sobic010G251300 Sobic007G062200--Sobic010G251300 Sobic007G062200--Sobic010G102800 Sobic003G339700 Sobic003G339700 Sobic007G062200--Sobic003G339700 Sobic007G062200--Sobic002G200700 Sobic008G077500 Sobic008G077500 Sobic007G062200--Sobic008G077500 Sobic004G207400 Sobic004G207400 Sobic007G062200--Sobic004G207400 Sobic010G102800--Sobic007G062200 Sobic001G411400 Sobic001G411400 Sobic010G102800--Sobic001G411400 Sobic002G225100 Sobic002G225100 Sobic010G102800--Sobic002G225100 Sobic004G223400 Sobic004G223400 Sobic010G102800--Sobic004G223400 Sobic001G160800 Sobic001G160800 Sobic010G102800--Sobic001G160800 Sobic002G173100 Sobic002G173100 Sobic010G102800--Sobic002G173100 Sobic008G119800 Sobic008G119800 Sobic010G102800--Sobic008G119800 Sobic003G029500 Sobic003G029500 Sobic010G102800--Sobic003G029500 Sobic005G005400 Sobic005G005400 Sobic010G102800--Sobic005G005400 Sobic010G241300 Sobic010G241300 Sobic008G186400--Sobic010G241300 Sobic008G186400--Sobic003G397200 Sobic008G186400--Sobic010G267700 Sobic005G111500 Sobic005G111500 Sobic008G186400--Sobic005G111500 Sobic001G006400 Sobic001G006400 Sobic008G186400--Sobic001G006400 Sobic002G102200 Sobic002G102200 Sobic008G186400--Sobic002G102200 Sobic001G168800 Sobic001G168800 Sobic008G186400--Sobic001G168800 Sobic007G059500 Sobic007G059500 Sobic008G186400--Sobic007G059500 Sobic004G227200 Sobic004G227200 Sobic008G186400--Sobic004G227200 Sobic003G157900 Sobic003G157900 Sobic005G142700--Sobic003G157900 Sobic001G314400 Sobic001G314400 Sobic005G142700--Sobic001G314400 Sobic007G090900 Sobic007G090900 Sobic005G142700--Sobic007G090900 Sobic003G329700 Sobic003G329700 Sobic005G142700--Sobic003G329700 Sobic005G142700--Sobic008G077500 Sobic008G190200 Sobic008G190200 Sobic005G142700--Sobic008G190200 Sobic005G142700--Sobic002G136100 Sobic006G212800 Sobic006G212800 Sobic005G142700--Sobic006G212800 Sobic005G142700--Sobic003G397600 Sobic003G246200--Sobic002G201900 Sobic003G246200--Sobic007G025900 Sobic003G246200--Sobic006G065900 Sobic003G246200--Sobic006G130000 Sobic003G246200--Sobic002G200700 Sobic003G246200--Sobic001G414000 Sobic003G246200--Sobic006G064200 Sobic003G246200--Sobic001G314400 Sobic003G002600 Sobic003G002600 Sobic003G246200--Sobic003G002600
Octagon: transcription factors


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