Gene annotation
Transcriptome id Sobic.010G199900.1
Synonym Sb10g024850
Functional annotation extracellular ligand-gated ion channel, putative, expressed
UniProt C5Z6A8
Pfam PF12056
Panther DB PTHR31963:SF6 PTHR31963
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G20300 : Protein of unknown function (DUF3537)
RAP-DB (Rice) LOC_Os06g42850.1 : extracellular ligand-gated ion channel, putative, expressed
MaizeGDB (Corn) Zm00025a051447
Brachypodium KQK17580
Barley HORVU7Hr1G092300.1 , HORVU7Hr1G092300.3 , HORVU7Hr1G092300.2 , HORVU7Hr1G092300.5 , HORVU7Hr1G092300.4
Wheat TraesCS7D02G385800 , TraesCS7D02G385800 , TraesCS7B02G291600 , TraesCS7A02G390000 , TraesCS7A02G390100 , TraesCS7A02G389900 , TraesCS7B02G291700
Populus -


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cDNA sequences
Sobic.010G199900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G046700 ABC transporter, ATP-binding protein, putative, expressed -
2 Sobic.008G075600 - -
3 Sobic.004G340800 OsFBX70 - F-box domain containing protein, expressed -
4 Sobic.004G115900 expressed protein -
5 Sobic.003G437800 abscisic stress-ripening, putative, expressed -
6 Sobic.003G064300 - -
7 Sobic.002G137800 gibberellin 20 oxidase 2, putative, expressed -
8 Sobic.010G231900 early nodulin 20 precursor, putative, expressed -
9 Sobic.006G272700 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
10 Sobic.001G041500 basic helix-loop-helix, putative, expressed -
11 Sobic.003G397500 expressed protein -
12 Sobic.010G201200 expressed protein -
13 Sobic.004G309600 ABA signaling component(PubMedID : 24151305)@"Central regulator in ABA signaling, biosynthesis, and drought resistance in rice"(PubMedID : 30367619)@bZIP transcription factor, putative, expressed K14432: ABA responsive element binding factor
14 Sobic.009G064400 cytochrome P450 71A1, putative, expressed -
15 Sobic.006G002900 zinc finger, C3HC4 type, domain containing protein, expressed -
16 Sobic.003G040900 photoperiodic flowering time gene(PubMedID : 22394582)@-(PubMedID : 21930910)@-(PubMedID : 24884377)@GIGANTEA, putative, expressed K12124: GIGANTEA
17 Sobic.001G292000 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
18 Sobic.007G055700 "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm"(PubMedID : 21880075)@Protein terpene synthase 10 (Os)(PubMedID : 27208977)@terpene synthase, putative, expressed -
19 Sobic.007G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@- -
20 Sobic.002G207100 - -


Gene co-expression network
sample Sobic010G199900 Sobic010G199900 Sobic010G046700 Sobic010G046700 Sobic010G199900--Sobic010G046700 Sobic008G075600 Sobic008G075600 Sobic010G199900--Sobic008G075600 Sobic004G340800 Sobic004G340800 Sobic010G199900--Sobic004G340800 Sobic004G115900 Sobic004G115900 Sobic010G199900--Sobic004G115900 Sobic003G437800 Sobic003G437800 Sobic010G199900--Sobic003G437800 Sobic003G064300 Sobic003G064300 Sobic010G199900--Sobic003G064300 Sobic002G137800 Sobic002G137800 Sobic010G199900--Sobic002G137800 Sobic010G231900 Sobic010G231900 Sobic010G199900--Sobic010G231900 Sobic006G272700 Sobic006G272700 Sobic010G199900--Sobic006G272700 Sobic001G292000 Sobic001G292000 Sobic010G046700--Sobic001G292000 Sobic003G051000 Sobic003G051000 Sobic010G046700--Sobic003G051000 Sobic010G046700--Sobic010G199900 Sobic007G164000 Sobic007G164000 Sobic010G046700--Sobic007G164000 Sobic001G110900 Sobic001G110900 Sobic010G046700--Sobic001G110900 Sobic001G057700 Sobic001G057700 Sobic010G046700--Sobic001G057700 Sobic001G312900 Sobic001G312900 Sobic010G046700--Sobic001G312900 Sobic006G264000 Sobic006G264000 Sobic010G046700--Sobic006G264000 Sobic008G140100 Sobic008G140100 Sobic010G046700--Sobic008G140100 Sobic002G325600 Sobic002G325600 Sobic008G075600--Sobic002G325600 Sobic007G143100 Sobic007G143100 Sobic008G075600--Sobic007G143100 Sobic007G169600 Sobic007G169600 Sobic008G075600--Sobic007G169600 Sobic009G076700 Sobic009G076700 Sobic008G075600--Sobic009G076700 Sobic002G331450 Sobic002G331450 Sobic008G075600--Sobic002G331450 Sobic005G016900 Sobic005G016900 Sobic008G075600--Sobic005G016900 Sobic007G143200 Sobic007G143200 Sobic008G075600--Sobic007G143200 Sobic003G397500 Sobic003G397500 Sobic008G075600--Sobic003G397500 Sobic007G073750 Sobic007G073750 Sobic008G075600--Sobic007G073750 Sobic004G340800--Sobic002G137800 Sobic003G403500 Sobic003G403500 Sobic004G340800--Sobic003G403500 Sobic001G351100 Sobic001G351100 Sobic004G340800--Sobic001G351100 Sobic005G072200 Sobic005G072200 Sobic004G340800--Sobic005G072200 Sobic004G092000 Sobic004G092000 Sobic004G340800--Sobic004G092000 Sobic002G073900 Sobic002G073900 Sobic004G340800--Sobic002G073900 Sobic004G340800--Sobic010G199900 Sobic001G414000 Sobic001G414000 Sobic004G340800--Sobic001G414000 Sobic005G045200 Sobic005G045200 Sobic004G340800--Sobic005G045200 Sobic009G076600 Sobic009G076600 Sobic004G115900--Sobic009G076600 Sobic004G115900--Sobic010G199900 Sobic004G115900--Sobic006G272700 Sobic004G115900--Sobic010G046700 Sobic002G207100 Sobic002G207100 Sobic004G115900--Sobic002G207100 Sobic004G115900--Sobic003G064300 Sobic004G115900--Sobic007G143200 Sobic004G115900--Sobic009G076700 Sobic001G210200 Sobic001G210200 Sobic004G115900--Sobic001G210200 Sobic003G397600 Sobic003G397600 Sobic003G437800--Sobic003G397600 Sobic002G001000 Sobic002G001000 Sobic003G437800--Sobic002G001000 Sobic003G437800--Sobic001G292000 Sobic006G145700 Sobic006G145700 Sobic003G437800--Sobic006G145700 Sobic002G072100 Sobic002G072100 Sobic003G437800--Sobic002G072100 Sobic002G072400 Sobic002G072400 Sobic003G437800--Sobic002G072400 Sobic010G177800 Sobic010G177800 Sobic003G437800--Sobic010G177800 Sobic009G187400 Sobic009G187400 Sobic003G437800--Sobic009G187400 Sobic004G207400 Sobic004G207400 Sobic003G437800--Sobic004G207400 Sobic003G397400 Sobic003G397400 Sobic003G064300--Sobic003G397400 Sobic003G064300--Sobic007G143200 Sobic003G064300--Sobic007G143100 Sobic003G064300--Sobic002G207100 Sobic003G064300--Sobic005G016900 Sobic003G064300--Sobic007G073750 Sobic003G064300--Sobic009G076700 Sobic003G064300--Sobic006G272700 Sobic009G064400 Sobic009G064400 Sobic003G064300--Sobic009G064400 Sobic001G095750 Sobic001G095750 Sobic002G137800--Sobic001G095750 Sobic001G118900 Sobic001G118900 Sobic002G137800--Sobic001G118900 Sobic002G137800--Sobic004G340800 Sobic002G137800--Sobic001G351100 Sobic006G205200 Sobic006G205200 Sobic002G137800--Sobic006G205200 Sobic001G161200 Sobic001G161200 Sobic002G137800--Sobic001G161200 Sobic003G109832 Sobic003G109832 Sobic002G137800--Sobic003G109832 Sobic003G138400 Sobic003G138400 Sobic002G137800--Sobic003G138400 Sobic009G028500 Sobic009G028500 Sobic002G137800--Sobic009G028500 Sobic009G161800 Sobic009G161800 Sobic010G231900--Sobic009G161800 Sobic009G182400 Sobic009G182400 Sobic010G231900--Sobic009G182400 Sobic010G231900--Sobic003G064300 Sobic010G231900--Sobic002G207100 Sobic010G231900--Sobic006G272700 Sobic010G231900--Sobic009G064400 Sobic010G231900--Sobic007G143100 Sobic008G040900 Sobic008G040900 Sobic010G231900--Sobic008G040900 Sobic010G231900--Sobic007G143200 Sobic001G027800 Sobic001G027800 Sobic006G272700--Sobic001G027800 Sobic010G253500 Sobic010G253500 Sobic006G272700--Sobic010G253500 Sobic001G210250 Sobic001G210250 Sobic006G272700--Sobic001G210250 Sobic006G272700--Sobic001G210200
Octagon: transcription factors


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