Gene annotation
Transcriptome id Sobic.001G099600.1
Synonym Sb01g008900
Functional annotation ankyrin repeat family protein, putative, expressed
UniProt C5WLV5
Pfam PF12796 PF13962
Panther DB PTHR24177:SF36 PTHR24177
NCBI CDD KOG4412; 26S proteasome regulatory complex, subunit PSMD10
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G03670 : ankyrin repeat family protein
RAP-DB (Rice) LOC_Os07g09530.1 : ankyrin repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a016862
Brachypodium KQK20472
Barley HORVU7Hr1G096820.1 , HORVU7Hr1G096820.2
Wheat TraesCS7B02G317700 , TraesCS7D02G410500 , TraesCS7A02G417600 , TraesCS3A02G351100 , TraesCS3D02G345200 , TraesCS6B02G013100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G269100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AWPM-19-like membrane family protein, putative, expressed -
2 Sobic.003G321400 plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.001G264400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
4 Sobic.004G297950 - -
5 Sobic.001G265800 hsp20/alpha crystallin family protein, putative, expressed -
6 Sobic.003G115200 expressed protein -
7 Sobic.009G221800 reticulon domain containing protein, putative, expressed -
8 Sobic.010G047600 plant protein of unknown function domain containing protein, expressed -
9 Sobic.003G000200 AWPM-19-like membrane family protein, putative, expressed -
10 Sobic.001G521300 expressed protein -
11 Sobic.008G077300 expressed protein -
12 Sobic.005G052500 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
13 Sobic.003G078900 reticulon domain containing protein, putative, expressed -
14 Sobic.005G110600 glycosyl hydrolase, putative, expressed K01183: chitinase
15 Sobic.005G047100 actin, putative, expressed K10355: actin, other eukaryote
16 Sobic.008G114000 expressed protein -
17 Sobic.001G264300 hsp20/alpha crystallin family protein, putative, expressed -
18 Sobic.001G046800 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.001G514300 Glutathione S-transferase("PubMedID : 26759170,PubMedID : 24597475")@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.001G261460 - -


Gene co-expression network
sample Sobic001G099600 Sobic001G099600 Sobic003G269100 Sobic003G269100 Sobic001G099600--Sobic003G269100 Sobic003G321400 Sobic003G321400 Sobic001G099600--Sobic003G321400 Sobic001G264400 Sobic001G264400 Sobic001G099600--Sobic001G264400 Sobic004G297950 Sobic004G297950 Sobic001G099600--Sobic004G297950 Sobic001G265800 Sobic001G265800 Sobic001G099600--Sobic001G265800 Sobic003G115200 Sobic003G115200 Sobic001G099600--Sobic003G115200 Sobic009G221800 Sobic009G221800 Sobic001G099600--Sobic009G221800 Sobic010G047600 Sobic010G047600 Sobic001G099600--Sobic010G047600 Sobic003G000200 Sobic003G000200 Sobic001G099600--Sobic003G000200 Sobic003G269100--Sobic003G321400 Sobic003G269100--Sobic001G099600 Sobic003G269100--Sobic004G297950 Sobic003G269100--Sobic003G115200 Sobic003G269100--Sobic010G047600 Sobic001G261460 Sobic001G261460 Sobic003G269100--Sobic001G261460 Sobic003G269100--Sobic001G264400 Sobic001G484000 Sobic001G484000 Sobic003G269100--Sobic001G484000 Sobic001G046800 Sobic001G046800 Sobic003G269100--Sobic001G046800 Sobic003G321400--Sobic003G269100 Sobic003G321400--Sobic003G115200 Sobic003G321400--Sobic009G221800 Sobic003G321400--Sobic010G047600 Sobic003G321400--Sobic003G000200 Sobic003G078900 Sobic003G078900 Sobic003G321400--Sobic003G078900 Sobic003G321400--Sobic001G261460 Sobic003G321400--Sobic001G264400 Sobic003G321400--Sobic001G099600 Sobic001G264400--Sobic001G265800 Sobic001G264400--Sobic003G321400 Sobic001G264400--Sobic009G221800 Sobic001G264300 Sobic001G264300 Sobic001G264400--Sobic001G264300 Sobic001G264400--Sobic003G269100 Sobic001G264400--Sobic001G099600 Sobic008G077300 Sobic008G077300 Sobic001G264400--Sobic008G077300 Sobic004G170800 Sobic004G170800 Sobic001G264400--Sobic004G170800 Sobic004G156900 Sobic004G156900 Sobic001G264400--Sobic004G156900 Sobic004G297950--Sobic003G269100 Sobic005G130600 Sobic005G130600 Sobic004G297950--Sobic005G130600 Sobic004G297950--Sobic003G321400 Sobic005G110600 Sobic005G110600 Sobic004G297950--Sobic005G110600 Sobic005G047100 Sobic005G047100 Sobic004G297950--Sobic005G047100 Sobic004G297950--Sobic001G099600 Sobic004G297950--Sobic001G264400 Sobic005G052500 Sobic005G052500 Sobic004G297950--Sobic005G052500 Sobic004G297950--Sobic001G484000 Sobic001G265800--Sobic001G264400 Sobic001G265800--Sobic009G221800 Sobic001G265800--Sobic003G321400 Sobic001G265800--Sobic001G264300 Sobic001G265800--Sobic001G099600 Sobic001G265800--Sobic003G078900 Sobic001G265800--Sobic003G269100 Sobic001G265800--Sobic010G047600 Sobic001G265800--Sobic004G170800 Sobic003G115200--Sobic003G321400 Sobic003G115200--Sobic003G000200 Sobic003G115200--Sobic003G269100 Sobic003G115200--Sobic001G261460 Sobic003G115200--Sobic010G047600 Sobic003G115200--Sobic009G221800 Sobic010G014400 Sobic010G014400 Sobic003G115200--Sobic010G014400 Sobic009G130300 Sobic009G130300 Sobic003G115200--Sobic009G130300 Sobic001G514200 Sobic001G514200 Sobic003G115200--Sobic001G514200 Sobic009G221800--Sobic003G078900 Sobic009G221800--Sobic003G321400 Sobic009G221800--Sobic010G047600 Sobic009G221800--Sobic001G261460 Sobic009G221800--Sobic003G000200 Sobic009G221800--Sobic001G514200 Sobic009G221800--Sobic001G264300 Sobic009G221800--Sobic009G130300 Sobic009G221800--Sobic001G264400 Sobic010G047600--Sobic001G261460 Sobic010G047600--Sobic001G046800 Sobic010G047600--Sobic003G321400 Sobic010G047600--Sobic009G221800 Sobic010G047600--Sobic001G514200 Sobic010G047600--Sobic003G078900 Sobic010G047600--Sobic003G000200 Sobic010G047600--Sobic003G115200 Sobic004G050700 Sobic004G050700 Sobic010G047600--Sobic004G050700 Sobic003G000200--Sobic009G130300 Sobic003G000200--Sobic003G321400 Sobic003G000200--Sobic003G078900 Sobic003G000200--Sobic001G261460 Sobic003G000200--Sobic009G221800 Sobic003G000200--Sobic003G115200 Sobic003G000200--Sobic010G047600 Sobic003G201200 Sobic003G201200 Sobic003G000200--Sobic003G201200 Sobic003G250700 Sobic003G250700 Sobic003G000200--Sobic003G250700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.