Gene annotation
Transcriptome id Sobic.001G307400.1
Synonym Sb01g029960
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
UniProt C5WTF2
Pfam PF00106
Panther DB PTHR24320 PTHR24320:SF100
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology K19329; WW domain-containing oxidoreductase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT4G11410 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os10g40020.3 : oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
MaizeGDB (Corn) Zm00025a052038 , Zm00025a003263
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G307400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G177200 expressed protein -
2 Sobic.008G181200 - -
3 Sobic.008G069000 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
4 Sobic.005G037800 sialyltransferase family domain containing protein, expressed -
5 Sobic.010G029800 - -
6 Sobic.002G238900 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.006G139400 expressed protein -
8 Sobic.002G049800 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
9 Sobic.008G184400 aspartic proteinase, putative, expressed -
10 Sobic.005G042400 expressed protein -
11 Sobic.010G137600 - -
12 Sobic.003G238900 GDSL-like lipase/acylhydrolase, putative, expressed -
13 Sobic.004G008700 - -
14 Sobic.009G017732 - -
15 Sobic.005G226800 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
16 Sobic.009G210700 LTPL29 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.006G250200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
18 Sobic.004G048300 - -
19 Sobic.001G323500 expressed protein -
20 Sobic.009G062300 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic001G307400 Sobic001G307400 Sobic005G177200 Sobic005G177200 Sobic001G307400--Sobic005G177200 Sobic008G181200 Sobic008G181200 Sobic001G307400--Sobic008G181200 Sobic008G069000 Sobic008G069000 Sobic001G307400--Sobic008G069000 Sobic005G037800 Sobic005G037800 Sobic001G307400--Sobic005G037800 Sobic010G029800 Sobic010G029800 Sobic001G307400--Sobic010G029800 Sobic002G238900 Sobic002G238900 Sobic001G307400--Sobic002G238900 Sobic006G139400 Sobic006G139400 Sobic001G307400--Sobic006G139400 Sobic002G049800 Sobic002G049800 Sobic001G307400--Sobic002G049800 Sobic008G184400 Sobic008G184400 Sobic001G307400--Sobic008G184400 Sobic005G177200--Sobic008G181200 Sobic005G177200--Sobic005G037800 Sobic005G177200--Sobic006G139400 Sobic005G177200--Sobic002G049800 Sobic005G177200--Sobic008G184400 Sobic001G323500 Sobic001G323500 Sobic005G177200--Sobic001G323500 Sobic005G177200--Sobic008G069000 Sobic009G210700 Sobic009G210700 Sobic005G177200--Sobic009G210700 Sobic003G238900 Sobic003G238900 Sobic005G177200--Sobic003G238900 Sobic008G181200--Sobic005G177200 Sobic008G181200--Sobic005G037800 Sobic008G181200--Sobic002G049800 Sobic008G181200--Sobic008G184400 Sobic008G181200--Sobic008G069000 Sobic008G181200--Sobic006G139400 Sobic008G181200--Sobic010G029800 Sobic010G137700 Sobic010G137700 Sobic008G181200--Sobic010G137700 Sobic008G181200--Sobic001G323500 Sobic008G069000--Sobic010G029800 Sobic004G048300 Sobic004G048300 Sobic008G069000--Sobic004G048300 Sobic008G069000--Sobic006G139400 Sobic008G069000--Sobic003G238900 Sobic004G008700 Sobic004G008700 Sobic008G069000--Sobic004G008700 Sobic008G069000--Sobic002G238900 Sobic008G069000--Sobic005G177200 Sobic007G040900 Sobic007G040900 Sobic008G069000--Sobic007G040900 Sobic008G069000--Sobic008G181200 Sobic005G037800--Sobic005G177200 Sobic005G037800--Sobic008G181200 Sobic005G037800--Sobic002G049800 Sobic005G037800--Sobic008G184400 Sobic005G037800--Sobic006G139400 Sobic005G037800--Sobic008G069000 Sobic005G037800--Sobic010G137700 Sobic005G037800--Sobic001G323500 Sobic005G037800--Sobic010G029800 Sobic010G029800--Sobic004G008700 Sobic005G042400 Sobic005G042400 Sobic010G029800--Sobic005G042400 Sobic010G029800--Sobic008G069000 Sobic003G099800 Sobic003G099800 Sobic010G029800--Sobic003G099800 Sobic005G052200 Sobic005G052200 Sobic010G029800--Sobic005G052200 Sobic010G137600 Sobic010G137600 Sobic010G029800--Sobic010G137600 Sobic010G029800--Sobic008G181200 Sobic010G029800--Sobic007G040900 Sobic004G114700 Sobic004G114700 Sobic010G029800--Sobic004G114700 Sobic002G238900--Sobic008G069000 Sobic002G238900--Sobic005G177200 Sobic002G238900--Sobic006G139400 Sobic002G238900--Sobic005G037800 Sobic002G238900--Sobic010G029800 Sobic002G238900--Sobic003G238900 Sobic002G238900--Sobic008G181200 Sobic002G238900--Sobic004G048300 Sobic002G238900--Sobic001G307400 Sobic006G139400--Sobic009G210700 Sobic006G139400--Sobic003G238900 Sobic006G139400--Sobic005G177200 Sobic008G045700 Sobic008G045700 Sobic006G139400--Sobic008G045700 Sobic006G139400--Sobic008G069000 Sobic006G139400--Sobic008G181200 Sobic006G139400--Sobic005G037800 Sobic006G139400--Sobic001G323500 Sobic003G167566 Sobic003G167566 Sobic006G139400--Sobic003G167566 Sobic002G049800--Sobic005G037800 Sobic002G049800--Sobic008G184400 Sobic002G049800--Sobic008G181200 Sobic002G049800--Sobic010G137700 Sobic002G049800--Sobic005G177200 Sobic005G226800 Sobic005G226800 Sobic002G049800--Sobic005G226800 Sobic002G049800--Sobic001G323500 Sobic009G006800 Sobic009G006800 Sobic002G049800--Sobic009G006800 Sobic003G135201 Sobic003G135201 Sobic002G049800--Sobic003G135201 Sobic008G184400--Sobic005G037800 Sobic008G184400--Sobic002G049800 Sobic008G184400--Sobic005G177200 Sobic008G184400--Sobic008G181200 Sobic008G184400--Sobic010G137700 Sobic008G184400--Sobic001G323500 Sobic008G184400--Sobic006G139400 Sobic008G184400--Sobic008G069000 Sobic008G184400--Sobic002G238900
Octagon: transcription factors


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