Gene annotation
Transcriptome id Sobic.001G329001.1
Synonym -
Functional annotation -
UniProt A0A1Z5S8U8
Pfam PF12174 PF05236
Panther DB PTHR15138 PTHR15138:SF14
NCBI CDD KOG2341; TATA box binding protein (TBP)-associated factor, RNA polymerase II
KEGG Orthology K03129; transcription initiation factor TFIID subunit 4
Gene Ontology GO:0006352; DNA-templated transcription, initiation GO:0005669transcription factor TFIID complex


Orthologs (automatic annotation)
TAIR AT5G43130 : TBP-associated factor 4
RAP-DB (Rice) LOC_Os03g32590.1 : transcription initiation factor, putative, expressed
MaizeGDB (Corn) Zm00025a005591 , Zm00025a002989
Brachypodium KQK14382
Barley HORVU4Hr1G034590.13 , HORVU4Hr1G034590.26 , HORVU4Hr1G034590.27 , HORVU4Hr1G034590.24 , HORVU4Hr1G034590.25 , HORVU4Hr1G034590.22 , HORVU4Hr1G034590.23 , HORVU4Hr1G034590.20 , HORVU4Hr1G034590.21 , HORVU4Hr1G034590.28 , HORVU4Hr1G034590.29 , HORVU4Hr1G034590.19 , HORVU4Hr1G034590.11 , HORVU4Hr1G034590.10 , HORVU4Hr1G034590.40 , HORVU4Hr1G034590.41 , HORVU4Hr1G034590.42 , HORVU4Hr1G034590.7 , HORVU4Hr1G034590.6 , HORVU4Hr1G034590.5 , HORVU4Hr1G034590.4 , HORVU4Hr1G034590.3 , HORVU4Hr1G034590.2 , HORVU4Hr1G034590.1 , HORVU4Hr1G034590.9 , HORVU4Hr1G034590.8 , HORVU4Hr1G034590.18 , HORVU4Hr1G034590.17 , HORVU4Hr1G034590.16 , HORVU4Hr1G034590.15 , HORVU4Hr1G034590.14 , HORVU4Hr1G034590.12 , HORVU4Hr1G034590.35 , HORVU4Hr1G034590.31 , HORVU4Hr1G034590.36 , HORVU4Hr1G034590.38 , HORVU4Hr1G034590.30 , HORVU4Hr1G034590.33 , HORVU4Hr1G034590.32 , HORVU4Hr1G034590.34 , HORVU4Hr1G034590.39
Wheat TraesCS4D02G160000 , TraesCS4A02G163100 , TraesCS4B02G150300 , TraesCS4B02G150300 , TraesCS4B02G150300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G410000 expressed protein -
2 Sobic.004G058400 RNA binding protein, putative, expressed -
3 Sobic.002G086700 - -
4 Sobic.002G257150 - -
5 Sobic.002G076300 - -
6 Sobic.008G177100 expressed protein -
7 Sobic.010G195000 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
8 Sobic.003G347560 - -
9 Sobic.006G134300 - -
10 Sobic.001G182400 - -
11 Sobic.004G242800 - -
12 Sobic.004G248200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.010G133450 - -
14 Sobic.010G129100 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
15 Sobic.004G250400 aluminum-activated malate transporter, putative, expressed -
16 Sobic.005G048700 NAD dependent epimerase/dehydratase family protein, putative, expressed -
17 Sobic.001G492400 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
18 Sobic.002G036500 ZOS7-02 - C2H2 zinc finger protein, expressed -
19 Sobic.001G498033 - -
20 Sobic.004G358150 - -


Gene co-expression network
sample Sobic001G329001 Sobic001G329001 Sobic003G410000 Sobic003G410000 Sobic001G329001--Sobic003G410000 Sobic004G058400 Sobic004G058400 Sobic001G329001--Sobic004G058400 Sobic002G086700 Sobic002G086700 Sobic001G329001--Sobic002G086700 Sobic002G257150 Sobic002G257150 Sobic001G329001--Sobic002G257150 Sobic002G076300 Sobic002G076300 Sobic001G329001--Sobic002G076300 Sobic008G177100 Sobic008G177100 Sobic001G329001--Sobic008G177100 Sobic010G195000 Sobic010G195000 Sobic001G329001--Sobic010G195000 Sobic003G347560 Sobic003G347560 Sobic001G329001--Sobic003G347560 Sobic006G134300 Sobic006G134300 Sobic001G329001--Sobic006G134300 Sobic003G410000--Sobic001G329001 Sobic003G410000--Sobic004G058400 Sobic003G410000--Sobic006G134300 Sobic010G133450 Sobic010G133450 Sobic003G410000--Sobic010G133450 Sobic010G129100 Sobic010G129100 Sobic003G410000--Sobic010G129100 Sobic001G492400 Sobic001G492400 Sobic003G410000--Sobic001G492400 Sobic003G410000--Sobic002G086700 Sobic003G410000--Sobic008G177100 Sobic004G250400 Sobic004G250400 Sobic003G410000--Sobic004G250400 Sobic004G058400--Sobic004G250400 Sobic004G058400--Sobic001G329001 Sobic004G058400--Sobic003G410000 Sobic004G058400--Sobic008G177100 Sobic009G094200 Sobic009G094200 Sobic004G058400--Sobic009G094200 Sobic004G058400--Sobic006G134300 Sobic004G082600 Sobic004G082600 Sobic004G058400--Sobic004G082600 Sobic001G001800 Sobic001G001800 Sobic004G058400--Sobic001G001800 Sobic004G227700 Sobic004G227700 Sobic004G058400--Sobic004G227700 Sobic004G358150 Sobic004G358150 Sobic002G086700--Sobic004G358150 Sobic002G086700--Sobic001G329001 Sobic002G086700--Sobic003G410000 Sobic002G086700--Sobic002G076300 Sobic002G244901 Sobic002G244901 Sobic002G086700--Sobic002G244901 Sobic002G086700--Sobic003G347560 Sobic001G498033 Sobic001G498033 Sobic002G086700--Sobic001G498033 Sobic006G151100 Sobic006G151100 Sobic002G086700--Sobic006G151100 Sobic003G375800 Sobic003G375800 Sobic002G086700--Sobic003G375800 Sobic002G257150--Sobic001G329001 Sobic005G132100 Sobic005G132100 Sobic002G257150--Sobic005G132100 Sobic002G257150--Sobic003G410000 Sobic004G248200 Sobic004G248200 Sobic002G257150--Sobic004G248200 Sobic002G257150--Sobic004G058400 Sobic004G242800 Sobic004G242800 Sobic002G257150--Sobic004G242800 Sobic002G257150--Sobic002G076300 Sobic004G206600 Sobic004G206600 Sobic002G257150--Sobic004G206600 Sobic002G257150--Sobic002G086700 Sobic002G076300--Sobic001G498033 Sobic002G076300--Sobic001G329001 Sobic002G076300--Sobic002G086700 Sobic002G076300--Sobic010G195000 Sobic010G054700 Sobic010G054700 Sobic002G076300--Sobic010G054700 Sobic002G377501 Sobic002G377501 Sobic002G076300--Sobic002G377501 Sobic002G076300--Sobic004G242800 Sobic004G347000 Sobic004G347000 Sobic002G076300--Sobic004G347000 Sobic009G235400 Sobic009G235400 Sobic002G076300--Sobic009G235400 Sobic004G127600 Sobic004G127600 Sobic008G177100--Sobic004G127600 Sobic008G177100--Sobic001G492400 Sobic002G187900 Sobic002G187900 Sobic008G177100--Sobic002G187900 Sobic008G177100--Sobic004G250400 Sobic002G262850 Sobic002G262850 Sobic008G177100--Sobic002G262850 Sobic005G048700 Sobic005G048700 Sobic008G177100--Sobic005G048700 Sobic008G177100--Sobic004G058400 Sobic008G177100--Sobic010G129100 Sobic006G255200 Sobic006G255200 Sobic008G177100--Sobic006G255200 Sobic004G093700 Sobic004G093700 Sobic010G195000--Sobic004G093700 Sobic010G195000--Sobic009G235400 Sobic006G045601 Sobic006G045601 Sobic010G195000--Sobic006G045601 Sobic010G195000--Sobic002G076300 Sobic010G195000--Sobic010G054700 Sobic010G195000--Sobic008G177100 Sobic007G183600 Sobic007G183600 Sobic010G195000--Sobic007G183600 Sobic010G195000--Sobic001G329001 Sobic010G100700 Sobic010G100700 Sobic010G195000--Sobic010G100700 Sobic003G347560--Sobic006G134300 Sobic003G347560--Sobic005G048700 Sobic003G347560--Sobic001G329001 Sobic003G347560--Sobic002G086700 Sobic008G104400 Sobic008G104400 Sobic003G347560--Sobic008G104400 Sobic008G187500 Sobic008G187500 Sobic003G347560--Sobic008G187500 Sobic003G347560--Sobic003G410000 Sobic003G347560--Sobic004G058400 Sobic003G347560--Sobic008G177100 Sobic006G134300--Sobic002G187900 Sobic006G249600 Sobic006G249600 Sobic006G134300--Sobic006G249600 Sobic006G134300--Sobic004G227700 Sobic003G155000 Sobic003G155000 Sobic006G134300--Sobic003G155000 Sobic003G253700 Sobic003G253700 Sobic006G134300--Sobic003G253700 Sobic003G263900 Sobic003G263900 Sobic006G134300--Sobic003G263900 Sobic003G365200 Sobic003G365200 Sobic006G134300--Sobic003G365200 Sobic006G134300--Sobic004G127600 Sobic001G212900 Sobic001G212900 Sobic006G134300--Sobic001G212900
Octagon: transcription factors


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