Gene annotation
Transcriptome id Sobic.004G058400.2,Sobic.004G058400.1
Synonym Sb04g004900
Functional annotation RNA binding protein, putative, expressed
UniProt A0A1Z5RL44 , C5XW61
Pfam PF10672
Panther DB PTHR11061 PTHR11061:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity


Orthologs (automatic annotation)
TAIR AT1G54310 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os02g07740.1 : RNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a019109
Brachypodium KQJ93572 , PNT65991 , PNT65992
Barley HORVU6Hr1G031520.7 , HORVU6Hr1G031520.6 , HORVU6Hr1G031520.5 , HORVU6Hr1G031520.4 , HORVU6Hr1G031520.3 , HORVU6Hr1G031520.2 , HORVU6Hr1G031520.1 , HORVU6Hr1G031520.9 , HORVU6Hr1G031520.8 , HORVU6Hr1G031520.11 , HORVU6Hr1G031520.10
Wheat TraesCS6B02G183900 , TraesCS6D02G145700 , TraesCS6D02G145700 , TraesCS6D02G145700 , TraesCS6D02G145700 , TraesCS6A02G155700 , TraesCS6A02G155700
Populus -


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cDNA sequences
Sobic.004G058400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G250400 aluminum-activated malate transporter, putative, expressed -
2 Sobic.001G329001 - K03129: transcription initiation factor TFIID subunit 4
3 Sobic.003G410000 expressed protein -
4 Sobic.008G177100 expressed protein -
5 Sobic.009G094200 - -
6 Sobic.006G134300 - -
7 Sobic.004G082600 OsFBX126 - F-box domain containing protein, expressed -
8 Sobic.001G001800 expressed protein -
9 Sobic.004G227700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase, putative, expressed -
10 Sobic.001G517900 protein kinase family protein, putative, expressed -
11 Sobic.006G268900 "STKc_IRAK, catalytic domain of the serine/threonine kinases"(PubMedID : 29491869)@expressed protein -
12 Sobic.004G093700 tetraspanin family protein, putative, expressed -
13 Sobic.003G063400 glycosyltransferase family 43 protein, putative, expressed -
14 Sobic.009G026600 - -
15 Sobic.001G370800 - -
16 Sobic.010G129100 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
17 Sobic.001G476600 Zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
18 Sobic.007G141900 resistance protein SlVe1 precursor, putative, expressed -
19 Sobic.001G492400 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
20 Sobic.004G127600 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase


Gene co-expression network
sample Sobic004G058400 Sobic004G058400 Sobic004G250400 Sobic004G250400 Sobic004G058400--Sobic004G250400 Sobic001G329001 Sobic001G329001 Sobic004G058400--Sobic001G329001 Sobic003G410000 Sobic003G410000 Sobic004G058400--Sobic003G410000 Sobic008G177100 Sobic008G177100 Sobic004G058400--Sobic008G177100 Sobic009G094200 Sobic009G094200 Sobic004G058400--Sobic009G094200 Sobic006G134300 Sobic006G134300 Sobic004G058400--Sobic006G134300 Sobic004G082600 Sobic004G082600 Sobic004G058400--Sobic004G082600 Sobic001G001800 Sobic001G001800 Sobic004G058400--Sobic001G001800 Sobic004G227700 Sobic004G227700 Sobic004G058400--Sobic004G227700 Sobic003G063400 Sobic003G063400 Sobic004G250400--Sobic003G063400 Sobic009G026600 Sobic009G026600 Sobic004G250400--Sobic009G026600 Sobic004G250400--Sobic004G227700 Sobic001G370800 Sobic001G370800 Sobic004G250400--Sobic001G370800 Sobic004G093700 Sobic004G093700 Sobic004G250400--Sobic004G093700 Sobic004G250400--Sobic004G058400 Sobic004G250400--Sobic004G082600 Sobic010G012200 Sobic010G012200 Sobic004G250400--Sobic010G012200 Sobic006G268900 Sobic006G268900 Sobic004G250400--Sobic006G268900 Sobic001G329001--Sobic003G410000 Sobic001G329001--Sobic004G058400 Sobic002G086700 Sobic002G086700 Sobic001G329001--Sobic002G086700 Sobic002G257150 Sobic002G257150 Sobic001G329001--Sobic002G257150 Sobic002G076300 Sobic002G076300 Sobic001G329001--Sobic002G076300 Sobic001G329001--Sobic008G177100 Sobic010G195000 Sobic010G195000 Sobic001G329001--Sobic010G195000 Sobic003G347560 Sobic003G347560 Sobic001G329001--Sobic003G347560 Sobic001G329001--Sobic006G134300 Sobic003G410000--Sobic001G329001 Sobic003G410000--Sobic004G058400 Sobic003G410000--Sobic006G134300 Sobic010G133450 Sobic010G133450 Sobic003G410000--Sobic010G133450 Sobic010G129100 Sobic010G129100 Sobic003G410000--Sobic010G129100 Sobic001G492400 Sobic001G492400 Sobic003G410000--Sobic001G492400 Sobic003G410000--Sobic002G086700 Sobic003G410000--Sobic008G177100 Sobic003G410000--Sobic004G250400 Sobic004G127600 Sobic004G127600 Sobic008G177100--Sobic004G127600 Sobic008G177100--Sobic001G492400 Sobic002G187900 Sobic002G187900 Sobic008G177100--Sobic002G187900 Sobic008G177100--Sobic004G250400 Sobic002G262850 Sobic002G262850 Sobic008G177100--Sobic002G262850 Sobic005G048700 Sobic005G048700 Sobic008G177100--Sobic005G048700 Sobic008G177100--Sobic004G058400 Sobic008G177100--Sobic010G129100 Sobic006G255200 Sobic006G255200 Sobic008G177100--Sobic006G255200 Sobic008G142200 Sobic008G142200 Sobic009G094200--Sobic008G142200 Sobic009G094200--Sobic001G001800 Sobic009G094200--Sobic004G227700 Sobic003G263900 Sobic003G263900 Sobic009G094200--Sobic003G263900 Sobic009G094200--Sobic004G082600 Sobic001G190900 Sobic001G190900 Sobic009G094200--Sobic001G190900 Sobic007G141900 Sobic007G141900 Sobic009G094200--Sobic007G141900 Sobic001G038700 Sobic001G038700 Sobic009G094200--Sobic001G038700 Sobic009G094200--Sobic009G026600 Sobic006G134300--Sobic002G187900 Sobic006G249600 Sobic006G249600 Sobic006G134300--Sobic006G249600 Sobic006G134300--Sobic004G227700 Sobic003G155000 Sobic003G155000 Sobic006G134300--Sobic003G155000 Sobic003G253700 Sobic003G253700 Sobic006G134300--Sobic003G253700 Sobic006G134300--Sobic003G263900 Sobic003G365200 Sobic003G365200 Sobic006G134300--Sobic003G365200 Sobic006G134300--Sobic004G127600 Sobic001G212900 Sobic001G212900 Sobic006G134300--Sobic001G212900 Sobic004G082600--Sobic004G227700 Sobic004G082600--Sobic009G094200 Sobic004G082600--Sobic008G142200 Sobic004G082600--Sobic002G187900 Sobic003G262600 Sobic003G262600 Sobic004G082600--Sobic003G262600 Sobic004G082600--Sobic004G250400 Sobic004G082600--Sobic003G155000 Sobic004G082600--Sobic001G001800 Sobic004G033650 Sobic004G033650 Sobic004G082600--Sobic004G033650 Sobic001G001800--Sobic004G033650 Sobic001G001800--Sobic009G094200 Sobic001G001800--Sobic009G026600 Sobic009G074800 Sobic009G074800 Sobic001G001800--Sobic009G074800 Sobic001G001800--Sobic008G142200 Sobic001G191500 Sobic001G191500 Sobic001G001800--Sobic001G191500 Sobic009G026700 Sobic009G026700 Sobic001G001800--Sobic009G026700 Sobic009G186300 Sobic009G186300 Sobic001G001800--Sobic009G186300 Sobic001G001800--Sobic001G038700 Sobic004G227700--Sobic008G142200 Sobic004G227700--Sobic002G187900 Sobic004G227700--Sobic009G094200 Sobic004G227700--Sobic004G082600 Sobic004G227700--Sobic003G263900 Sobic004G227700--Sobic003G155000 Sobic004G227700--Sobic003G063400 Sobic004G227700--Sobic006G134300 Sobic004G227700--Sobic004G250400
Octagon: transcription factors


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