Gene annotation
Transcriptome id Sobic.001G343100.6,Sobic.001G343100.7,Sobic.001G343100.4,Sobic.001G343100.2,Sobic.001G343100.3,Sobic.001G343100.5
Synonym 3BETAHSD/D1, AT3BETAHSD/D1
Functional annotation sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed
UniProt A0A1Z5S936 , A0A1Z5S935 , A0A1Z5S9C6 , A0A1Z5S9L9 , A0A1Z5S904
Pfam PF01370 PF01370 PF01073
Panther DB PTHR10366 PTHR10366:SF242
NCBI CDD KOG1430; C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity GO:0003824catalytic activity GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006694steroid biosynthetic process GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity


Orthologs (automatic annotation)
TAIR AT1G47290 : 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1
RAP-DB (Rice) LOC_Os03g29150.1,LOC_Os03g29170.1 : sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed,NAD dependent epimerase/dehydratase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a052162 , Zm00025a002788
Brachypodium -
Barley HORVU7Hr1G118180.4 , HORVU7Hr1G118180.5 , HORVU7Hr1G118180.2 , HORVU7Hr1G118180.3 , HORVU7Hr1G118180.1
Wheat TraesCS7A02G538700 , TraesCS7A02G538700 , TraesCS5D02G006300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G122866 - -
2 Sobic.007G047200 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
3 Sobic.003G225000 OsFBX26 - F-box domain containing protein, expressed -
4 Sobic.003G076100 limonoid UDP-glucosyltransferase, putative, expressed -
5 Sobic.003G277850 - -
6 Sobic.007G079500 hypothetical protein -
7 Sobic.001G052500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
8 Sobic.008G017400 expressed protein -
9 Sobic.006G163033 - -
10 Sobic.006G252532 - -
11 Sobic.010G124300 estradiol 17-beta-dehydrogenase 12, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
12 Sobic.004G279900 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
13 Sobic.003G123800 expressed protein -
14 Sobic.002G421501 - -
15 Sobic.004G093300 interferon-related developmental regulator family protein, putative, expressed -
16 Sobic.006G209200 transferase family domain containing protein, expressed -
17 Sobic.007G159300 basic helix-loop-helix, putative, expressed -
18 Sobic.010G188700 expressed protein -
19 Sobic.009G005000 cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed -
20 Sobic.007G002400 - -


Gene co-expression network
sample Sobic001G343100 Sobic001G343100 Sobic007G122866 Sobic007G122866 Sobic001G343100--Sobic007G122866 Sobic007G047200 Sobic007G047200 Sobic001G343100--Sobic007G047200 Sobic003G225000 Sobic003G225000 Sobic001G343100--Sobic003G225000 Sobic003G076100 Sobic003G076100 Sobic001G343100--Sobic003G076100 Sobic003G277850 Sobic003G277850 Sobic001G343100--Sobic003G277850 Sobic007G079500 Sobic007G079500 Sobic001G343100--Sobic007G079500 Sobic001G052500 Sobic001G052500 Sobic001G343100--Sobic001G052500 Sobic008G017400 Sobic008G017400 Sobic001G343100--Sobic008G017400 Sobic006G163033 Sobic006G163033 Sobic001G343100--Sobic006G163033 Sobic007G122866--Sobic001G052500 Sobic007G122866--Sobic003G076100 Sobic003G043550 Sobic003G043550 Sobic007G122866--Sobic003G043550 Sobic004G279900 Sobic004G279900 Sobic007G122866--Sobic004G279900 Sobic007G122866--Sobic006G163033 Sobic001G194401 Sobic001G194401 Sobic007G122866--Sobic001G194401 Sobic007G122866--Sobic003G277850 Sobic006G253700 Sobic006G253700 Sobic007G122866--Sobic006G253700 Sobic004G195500 Sobic004G195500 Sobic007G122866--Sobic004G195500 Sobic009G240100 Sobic009G240100 Sobic007G047200--Sobic009G240100 Sobic006G252532 Sobic006G252532 Sobic007G047200--Sobic006G252532 Sobic003G124900 Sobic003G124900 Sobic007G047200--Sobic003G124900 Sobic003G380700 Sobic003G380700 Sobic007G047200--Sobic003G380700 Sobic003G059600 Sobic003G059600 Sobic007G047200--Sobic003G059600 Sobic007G047200--Sobic004G279900 Sobic006G130700 Sobic006G130700 Sobic007G047200--Sobic006G130700 Sobic010G043350 Sobic010G043350 Sobic007G047200--Sobic010G043350 Sobic003G199650 Sobic003G199650 Sobic007G047200--Sobic003G199650 Sobic003G079466 Sobic003G079466 Sobic003G225000--Sobic003G079466 Sobic003G225000--Sobic007G079500 Sobic003G225000--Sobic007G122866 Sobic003G225000--Sobic003G076100 Sobic003G225000--Sobic004G279900 Sobic003G225000--Sobic001G052500 Sobic004G271100 Sobic004G271100 Sobic003G225000--Sobic004G271100 Sobic003G225000--Sobic001G343100 Sobic003G225000--Sobic006G163033 Sobic003G076100--Sobic007G122866 Sobic007G159300 Sobic007G159300 Sobic003G076100--Sobic007G159300 Sobic003G076100--Sobic001G052500 Sobic003G076100--Sobic004G271100 Sobic003G076100--Sobic006G163033 Sobic005G103800 Sobic005G103800 Sobic003G076100--Sobic005G103800 Sobic001G206600 Sobic001G206600 Sobic003G076100--Sobic001G206600 Sobic003G076100--Sobic003G277850 Sobic003G076100--Sobic003G225000 Sobic003G123800 Sobic003G123800 Sobic003G277850--Sobic003G123800 Sobic004G093300 Sobic004G093300 Sobic003G277850--Sobic004G093300 Sobic009G005000 Sobic009G005000 Sobic003G277850--Sobic009G005000 Sobic006G209200 Sobic006G209200 Sobic003G277850--Sobic006G209200 Sobic001G173251 Sobic001G173251 Sobic003G277850--Sobic001G173251 Sobic003G277850--Sobic007G079500 Sobic004G022700 Sobic004G022700 Sobic003G277850--Sobic004G022700 Sobic005G144900 Sobic005G144900 Sobic003G277850--Sobic005G144900 Sobic006G175100 Sobic006G175100 Sobic003G277850--Sobic006G175100 Sobic007G079500--Sobic001G173251 Sobic002G363466 Sobic002G363466 Sobic007G079500--Sobic002G363466 Sobic007G079500--Sobic006G209200 Sobic007G079500--Sobic004G093300 Sobic007G079500--Sobic003G277850 Sobic007G079500--Sobic003G079466 Sobic007G079500--Sobic004G279900 Sobic003G223600 Sobic003G223600 Sobic007G079500--Sobic003G223600 Sobic007G002400 Sobic007G002400 Sobic007G079500--Sobic007G002400 Sobic001G052500--Sobic007G122866 Sobic001G052500--Sobic003G076100 Sobic004G280000 Sobic004G280000 Sobic001G052500--Sobic004G280000 Sobic010G072200 Sobic010G072200 Sobic001G052500--Sobic010G072200 Sobic001G052500--Sobic006G253700 Sobic001G108800 Sobic001G108800 Sobic001G052500--Sobic001G108800 Sobic008G050500 Sobic008G050500 Sobic001G052500--Sobic008G050500 Sobic003G085750 Sobic003G085750 Sobic001G052500--Sobic003G085750 Sobic001G052500--Sobic006G252532 Sobic008G017400--Sobic006G163033 Sobic008G017400--Sobic003G123800 Sobic008G017400--Sobic004G093300 Sobic008G017400--Sobic003G223600 Sobic008G017400--Sobic003G277850 Sobic008G017400--Sobic004G279900 Sobic008G035300 Sobic008G035300 Sobic008G017400--Sobic008G035300 Sobic002G117300 Sobic002G117300 Sobic008G017400--Sobic002G117300 Sobic001G383600 Sobic001G383600 Sobic008G017400--Sobic001G383600 Sobic006G163033--Sobic003G223600 Sobic006G163033--Sobic007G159300 Sobic006G163033--Sobic004G279900 Sobic006G174000 Sobic006G174000 Sobic006G163033--Sobic006G174000 Sobic006G163033--Sobic007G079500 Sobic006G163033--Sobic007G122866 Sobic006G163033--Sobic004G093300 Sobic006G205800 Sobic006G205800 Sobic006G163033--Sobic006G205800 Sobic006G163033--Sobic006G209200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.