Gene annotation
Transcriptome id Sobic.001G343300.1
Synonym 3BETAHSD/D1, AT3BETAHSD/D1, Sb01g032960
Functional annotation 3-beta-hydroxy-delta5-steroid dehydrogenase (At) (PubMedID : 27208977)
NAD dependent epimerase/dehydratase family protein, putative, expressed
UniProt A0A1B6QMN2
Pfam PF01370
Panther DB PTHR10366 PTHR10366:SF242
NCBI CDD KOG1430; C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases
KEGG Orthology K07748; NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT1G47290 : 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1
RAP-DB (Rice) LOC_Os03g29150.1 : NAD dependent epimerase/dehydratase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a002788
Brachypodium -
Barley HORVU7Hr1G118180.4 , HORVU7Hr1G118180.5 , HORVU7Hr1G118180.2 , HORVU7Hr1G118180.3 , HORVU7Hr1G118180.1
Wheat TraesCS5D02G006300 , TraesCS7A02G538700 , TraesCS7A02G538700 , TraesCS7B02G459300 , TraesCSU02G232300 , TraesCS7B02G459300 , TraesCS7B02G459300
Populus -


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cDNA sequences
Sobic.001G343300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G199632 - -
2 Sobic.009G119400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@glycosyl hydrolases family 17, putative, expressed -
3 Sobic.008G163200 OsSCP9 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
4 Sobic.005G183300 resistance protein, putative, expressed -
5 Sobic.002G329500 Beta amylase BAM (Zm)(PubMedID : 27208977)@beta-amylase, putative, expressed K01177: beta-amylase
6 Sobic.004G060700 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
7 Sobic.001G435600 - -
8 Sobic.007G009600 expressed protein -
9 Sobic.001G307300 short chain dehydrogenase/reductase protein, putative, expressed -
10 Sobic.002G342600 cytochrome c, putative, expressed K08906: cytochrome c6
11 Sobic.009G115050 - -
12 Sobic.002G415300 - -
13 Sobic.007G170800 Fatty acyl CoA reductase 1 FAR1 (At)(PubMedID : 27208977)@male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
14 Sobic.001G003600 GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.002G416950 - -
16 Sobic.003G058600 cytochrome P450, putative, expressed -
17 Sobic.002G415400 - -
18 Sobic.001G127700 possible lysine decarboxylase domain containing protein, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
19 Sobic.003G096100 auxin-induced protein 5NG4, putative, expressed -
20 Sobic.001G379300 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic001G343300 Sobic001G343300 Sobic001G199632 Sobic001G199632 Sobic001G343300--Sobic001G199632 Sobic009G119400 Sobic009G119400 Sobic001G343300--Sobic009G119400 Sobic008G163200 Sobic008G163200 Sobic001G343300--Sobic008G163200 Sobic005G183300 Sobic005G183300 Sobic001G343300--Sobic005G183300 Sobic002G329500 Sobic002G329500 Sobic001G343300--Sobic002G329500 Sobic004G060700 Sobic004G060700 Sobic001G343300--Sobic004G060700 Sobic001G435600 Sobic001G435600 Sobic001G343300--Sobic001G435600 Sobic007G009600 Sobic007G009600 Sobic001G343300--Sobic007G009600 Sobic001G307300 Sobic001G307300 Sobic001G343300--Sobic001G307300 Sobic001G199632--Sobic001G343300 Sobic002G192700 Sobic002G192700 Sobic001G199632--Sobic002G192700 Sobic002G342600 Sobic002G342600 Sobic001G199632--Sobic002G342600 Sobic003G212800 Sobic003G212800 Sobic001G199632--Sobic003G212800 Sobic003G365900 Sobic003G365900 Sobic001G199632--Sobic003G365900 Sobic005G035100 Sobic005G035100 Sobic001G199632--Sobic005G035100 Sobic008G097000 Sobic008G097000 Sobic001G199632--Sobic008G097000 Sobic007G003700 Sobic007G003700 Sobic001G199632--Sobic007G003700 Sobic009G035601 Sobic009G035601 Sobic001G199632--Sobic009G035601 Sobic002G351000 Sobic002G351000 Sobic009G119400--Sobic002G351000 Sobic002G141100 Sobic002G141100 Sobic009G119400--Sobic002G141100 Sobic009G119400--Sobic001G307300 Sobic009G215600 Sobic009G215600 Sobic009G119400--Sobic009G215600 Sobic009G119400--Sobic007G009600 Sobic009G119400--Sobic004G060700 Sobic007G170800 Sobic007G170800 Sobic009G119400--Sobic007G170800 Sobic009G119400--Sobic008G163200 Sobic005G110436 Sobic005G110436 Sobic009G119400--Sobic005G110436 Sobic002G415300 Sobic002G415300 Sobic008G163200--Sobic002G415300 Sobic008G163200--Sobic004G060700 Sobic002G415400 Sobic002G415400 Sobic008G163200--Sobic002G415400 Sobic002G416950 Sobic002G416950 Sobic008G163200--Sobic002G416950 Sobic008G163200--Sobic007G170800 Sobic003G068300 Sobic003G068300 Sobic008G163200--Sobic003G068300 Sobic001G379300 Sobic001G379300 Sobic008G163200--Sobic001G379300 Sobic001G255300 Sobic001G255300 Sobic008G163200--Sobic001G255300 Sobic008G163200--Sobic001G435600 Sobic005G183300--Sobic001G343300 Sobic001G336800 Sobic001G336800 Sobic005G183300--Sobic001G336800 Sobic005G183300--Sobic001G307300 Sobic002G397400 Sobic002G397400 Sobic005G183300--Sobic002G397400 Sobic005G218700 Sobic005G218700 Sobic005G183300--Sobic005G218700 Sobic005G183500 Sobic005G183500 Sobic005G183300--Sobic005G183500 Sobic001G448750 Sobic001G448750 Sobic005G183300--Sobic001G448750 Sobic005G183300--Sobic008G163200 Sobic005G029400 Sobic005G029400 Sobic005G183300--Sobic005G029400 Sobic009G115050 Sobic009G115050 Sobic002G329500--Sobic009G115050 Sobic002G329500--Sobic002G415400 Sobic002G329500--Sobic001G435600 Sobic002G329500--Sobic002G415300 Sobic001G003600 Sobic001G003600 Sobic002G329500--Sobic001G003600 Sobic002G329500--Sobic004G060700 Sobic001G127700 Sobic001G127700 Sobic002G329500--Sobic001G127700 Sobic003G058600 Sobic003G058600 Sobic002G329500--Sobic003G058600 Sobic004G076000 Sobic004G076000 Sobic002G329500--Sobic004G076000 Sobic004G060700--Sobic002G416950 Sobic004G060700--Sobic002G415300 Sobic004G060700--Sobic007G170800 Sobic004G060700--Sobic007G009600 Sobic004G060700--Sobic008G163200 Sobic004G060700--Sobic002G415400 Sobic004G060700--Sobic001G435600 Sobic006G238100 Sobic006G238100 Sobic004G060700--Sobic006G238100 Sobic004G060700--Sobic001G379300 Sobic001G435600--Sobic002G415300 Sobic001G435600--Sobic002G415400 Sobic001G435600--Sobic004G060700 Sobic001G435600--Sobic002G416950 Sobic001G435600--Sobic009G115050 Sobic001G435600--Sobic002G329500 Sobic001G435600--Sobic008G163200 Sobic001G435600--Sobic001G003600 Sobic001G435600--Sobic007G170800 Sobic007G009600--Sobic004G060700 Sobic007G009600--Sobic002G416950 Sobic007G009600--Sobic007G170800 Sobic007G009600--Sobic001G379300 Sobic007G009600--Sobic006G238100 Sobic007G009600--Sobic008G163200 Sobic007G009600--Sobic002G415300 Sobic007G009600--Sobic001G435600 Sobic007G009600--Sobic002G415400 Sobic001G307300--Sobic009G119400 Sobic001G307300--Sobic001G336800 Sobic010G196400 Sobic010G196400 Sobic001G307300--Sobic010G196400 Sobic001G275600 Sobic001G275600 Sobic001G307300--Sobic001G275600 Sobic001G307300--Sobic009G215600 Sobic001G307300--Sobic002G397400 Sobic001G307300--Sobic002G351000 Sobic009G151000 Sobic009G151000 Sobic001G307300--Sobic009G151000 Sobic001G265900 Sobic001G265900 Sobic001G307300--Sobic001G265900
Octagon: transcription factors


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