Gene annotation
Transcriptome id Sobic.001G307300.1,Sobic.001G307300.2,Sobic.001G307300.3
Synonym
Functional annotation short chain dehydrogenase/reductase protein, putative, expressed
UniProt A0A1Z5S8E9 , A0A1Z5S8E3
Pfam PF00106
Panther DB PTHR24320 PTHR24320:SF100
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT4G11410 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os10g40030.11,LOC_Os10g40030.1 : short chain dehydrogenase/reductase protein, putative, expressed
MaizeGDB (Corn) Zm00025a052038 , Zm00025a003263
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G119400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@glycosyl hydrolases family 17, putative, expressed -
2 Sobic.001G336800 - -
3 Sobic.010G196400 expressed protein -
4 Sobic.001G275600 peptide transporter PTR2, putative, expressed -
5 Sobic.009G215600 expressed protein -
6 Sobic.002G397400 thiol protease SEN102 precursor, putative, expressed -
7 Sobic.002G351000 fasciclin domain containing protein, expressed -
8 Sobic.009G151000 Subtilase family protein("PubMedID : 26759170,PubMedID : 24597475")@OsSub47 - Putative Subtilisin homologue, expressed -
9 Sobic.001G265900 "similar to Proline-rich protein precursor, structural protein of cell walls in plants"(PubMedID : 24655390)@similar to Proline-rich protein precursor(PubMedID : 24655390)@POEI13 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
10 Sobic.002G141100 GDSL-like lipase/acylhydrolase, putative, expressed -
11 Sobic.003G085200 expressed protein -
12 Sobic.006G038850 - -
13 Sobic.005G212400 Leucine Rich Repeat family protein, expressed -
14 Sobic.008G163000 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR57 - Auxin-responsive SAUR gene family member, expressed -
15 Sobic.008G163200 OsSCP9 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
16 Sobic.001G127700 possible lysine decarboxylase domain containing protein, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
17 Sobic.005G110436 - -
18 Sobic.005G147800 Ser/Thr protein phosphatase family protein, putative, expressed -
19 Sobic.002G415300 - -
20 Sobic.003G108000 expressed protein -


Gene co-expression network
sample Sobic001G307300 Sobic001G307300 Sobic009G119400 Sobic009G119400 Sobic001G307300--Sobic009G119400 Sobic001G336800 Sobic001G336800 Sobic001G307300--Sobic001G336800 Sobic010G196400 Sobic010G196400 Sobic001G307300--Sobic010G196400 Sobic001G275600 Sobic001G275600 Sobic001G307300--Sobic001G275600 Sobic009G215600 Sobic009G215600 Sobic001G307300--Sobic009G215600 Sobic002G397400 Sobic002G397400 Sobic001G307300--Sobic002G397400 Sobic002G351000 Sobic002G351000 Sobic001G307300--Sobic002G351000 Sobic009G151000 Sobic009G151000 Sobic001G307300--Sobic009G151000 Sobic001G265900 Sobic001G265900 Sobic001G307300--Sobic001G265900 Sobic009G119400--Sobic002G351000 Sobic002G141100 Sobic002G141100 Sobic009G119400--Sobic002G141100 Sobic009G119400--Sobic001G307300 Sobic009G119400--Sobic009G215600 Sobic007G009600 Sobic007G009600 Sobic009G119400--Sobic007G009600 Sobic004G060700 Sobic004G060700 Sobic009G119400--Sobic004G060700 Sobic007G170800 Sobic007G170800 Sobic009G119400--Sobic007G170800 Sobic008G163200 Sobic008G163200 Sobic009G119400--Sobic008G163200 Sobic005G110436 Sobic005G110436 Sobic009G119400--Sobic005G110436 Sobic001G336800--Sobic001G307300 Sobic001G336800--Sobic009G215600 Sobic001G336800--Sobic009G151000 Sobic001G336800--Sobic001G275600 Sobic009G070600 Sobic009G070600 Sobic001G336800--Sobic009G070600 Sobic001G336800--Sobic009G119400 Sobic001G336800--Sobic008G163200 Sobic001G336800--Sobic002G141100 Sobic005G029400 Sobic005G029400 Sobic001G336800--Sobic005G029400 Sobic009G162800 Sobic009G162800 Sobic010G196400--Sobic009G162800 Sobic001G066900 Sobic001G066900 Sobic010G196400--Sobic001G066900 Sobic010G196400--Sobic001G265900 Sobic006G166800 Sobic006G166800 Sobic010G196400--Sobic006G166800 Sobic010G196400--Sobic001G307300 Sobic003G153400 Sobic003G153400 Sobic010G196400--Sobic003G153400 Sobic010G196400--Sobic001G275600 Sobic010G196400--Sobic009G151000 Sobic001G250200 Sobic001G250200 Sobic010G196400--Sobic001G250200 Sobic001G275600--Sobic009G151000 Sobic008G163000 Sobic008G163000 Sobic001G275600--Sobic008G163000 Sobic001G275600--Sobic009G215600 Sobic001G275600--Sobic001G307300 Sobic006G001000 Sobic006G001000 Sobic001G275600--Sobic006G001000 Sobic001G275600--Sobic009G119400 Sobic008G173200 Sobic008G173200 Sobic001G275600--Sobic008G173200 Sobic001G275600--Sobic010G196400 Sobic001G275600--Sobic002G141100 Sobic009G215600--Sobic002G141100 Sobic009G215600--Sobic008G163200 Sobic004G038300 Sobic004G038300 Sobic009G215600--Sobic004G038300 Sobic002G209800 Sobic002G209800 Sobic009G215600--Sobic002G209800 Sobic002G416950 Sobic002G416950 Sobic009G215600--Sobic002G416950 Sobic004G300800 Sobic004G300800 Sobic009G215600--Sobic004G300800 Sobic009G215600--Sobic004G060700 Sobic001G379300 Sobic001G379300 Sobic009G215600--Sobic001G379300 Sobic002G415300 Sobic002G415300 Sobic009G215600--Sobic002G415300 Sobic005G147800 Sobic005G147800 Sobic002G397400--Sobic005G147800 Sobic005G212400 Sobic005G212400 Sobic002G397400--Sobic005G212400 Sobic007G142300 Sobic007G142300 Sobic002G397400--Sobic007G142300 Sobic010G124200 Sobic010G124200 Sobic002G397400--Sobic010G124200 Sobic002G397400--Sobic001G265900 Sobic010G107200 Sobic010G107200 Sobic002G397400--Sobic010G107200 Sobic001G127700 Sobic001G127700 Sobic002G397400--Sobic001G127700 Sobic005G209900 Sobic005G209900 Sobic002G397400--Sobic005G209900 Sobic002G397400--Sobic001G307300 Sobic002G351000--Sobic005G110436 Sobic002G351000--Sobic002G141100 Sobic002G351000--Sobic009G119400 Sobic004G076000 Sobic004G076000 Sobic002G351000--Sobic004G076000 Sobic003G300500 Sobic003G300500 Sobic002G351000--Sobic003G300500 Sobic001G003600 Sobic001G003600 Sobic002G351000--Sobic001G003600 Sobic001G017000 Sobic001G017000 Sobic002G351000--Sobic001G017000 Sobic008G123600 Sobic008G123600 Sobic002G351000--Sobic008G123600 Sobic009G115050 Sobic009G115050 Sobic002G351000--Sobic009G115050 Sobic009G151000--Sobic001G275600 Sobic009G151000--Sobic008G173200 Sobic009G151000--Sobic003G153400 Sobic009G151000--Sobic010G196400 Sobic003G108000 Sobic003G108000 Sobic009G151000--Sobic003G108000 Sobic009G151000--Sobic001G307300 Sobic009G151000--Sobic006G001000 Sobic009G151000--Sobic001G336800 Sobic009G151000--Sobic009G070600 Sobic001G265900--Sobic005G147800 Sobic001G265900--Sobic010G196400 Sobic001G265900--Sobic001G250200 Sobic001G265900--Sobic001G066900 Sobic001G265900--Sobic007G142300 Sobic001G265900--Sobic002G397400 Sobic001G265900--Sobic010G107200 Sobic001G265900--Sobic001G307300 Sobic008G082400 Sobic008G082400 Sobic001G265900--Sobic008G082400
Octagon: transcription factors


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