Gene annotation
Transcriptome id Sobic.003G108000.1
Synonym Sb03g009080
Functional annotation expressed protein
UniProt C5XFM0
Pfam PF11820
Panther DB PTHR33128 PTHR33128:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G08391 : Protein of unknown function (DUF 3339)
RAP-DB (Rice) LOC_Os05g01280.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU3Hr1G014960.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G108000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G151000 Subtilase family protein("PubMedID : 26759170,PubMedID : 24597475")@OsSub47 - Putative Subtilisin homologue, expressed -
2 Sobic.010G196400 expressed protein -
3 Sobic.009G119400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@glycosyl hydrolases family 17, putative, expressed -
4 Sobic.001G275600 peptide transporter PTR2, putative, expressed -
5 Sobic.008G163000 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR57 - Auxin-responsive SAUR gene family member, expressed -
6 Sobic.004G168700 harpin-induced protein 1 domain containing protein, expressed -
7 Sobic.006G001000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@cytochrome P450 93A2, putative, expressed -
8 Sobic.001G307300 short chain dehydrogenase/reductase protein, putative, expressed -
9 Sobic.003G085200 expressed protein -
10 Sobic.009G215600 expressed protein -
11 Sobic.002G351000 fasciclin domain containing protein, expressed -
12 Sobic.001G336800 - -
13 Sobic.003G153400 GDSL-like lipase/acylhydrolase, putative, expressed -
14 Sobic.003G071400 expressed protein K10703: HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
15 Sobic.002G141100 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.004G263000 expressed protein -
17 Sobic.009G162800 laccase precursor protein, putative, expressed K05909: laccase
18 Sobic.008G164900 membrane associated DUF588 domain containing protein, putative, expressed -
19 Sobic.006G166800 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.003G383800 serine/threonine-protein kinase receptor precursor, putative, expressed -


Gene co-expression network
sample Sobic003G108000 Sobic003G108000 Sobic009G151000 Sobic009G151000 Sobic003G108000--Sobic009G151000 Sobic010G196400 Sobic010G196400 Sobic003G108000--Sobic010G196400 Sobic009G119400 Sobic009G119400 Sobic003G108000--Sobic009G119400 Sobic001G275600 Sobic001G275600 Sobic003G108000--Sobic001G275600 Sobic008G163000 Sobic008G163000 Sobic003G108000--Sobic008G163000 Sobic004G168700 Sobic004G168700 Sobic003G108000--Sobic004G168700 Sobic006G001000 Sobic006G001000 Sobic003G108000--Sobic006G001000 Sobic001G307300 Sobic001G307300 Sobic003G108000--Sobic001G307300 Sobic003G085200 Sobic003G085200 Sobic003G108000--Sobic003G085200 Sobic009G151000--Sobic001G275600 Sobic008G173200 Sobic008G173200 Sobic009G151000--Sobic008G173200 Sobic003G153400 Sobic003G153400 Sobic009G151000--Sobic003G153400 Sobic009G151000--Sobic010G196400 Sobic009G151000--Sobic003G108000 Sobic009G151000--Sobic001G307300 Sobic009G151000--Sobic006G001000 Sobic001G336800 Sobic001G336800 Sobic009G151000--Sobic001G336800 Sobic009G070600 Sobic009G070600 Sobic009G151000--Sobic009G070600 Sobic009G162800 Sobic009G162800 Sobic010G196400--Sobic009G162800 Sobic001G066900 Sobic001G066900 Sobic010G196400--Sobic001G066900 Sobic001G265900 Sobic001G265900 Sobic010G196400--Sobic001G265900 Sobic006G166800 Sobic006G166800 Sobic010G196400--Sobic006G166800 Sobic010G196400--Sobic001G307300 Sobic010G196400--Sobic003G153400 Sobic010G196400--Sobic001G275600 Sobic010G196400--Sobic009G151000 Sobic001G250200 Sobic001G250200 Sobic010G196400--Sobic001G250200 Sobic002G351000 Sobic002G351000 Sobic009G119400--Sobic002G351000 Sobic002G141100 Sobic002G141100 Sobic009G119400--Sobic002G141100 Sobic009G119400--Sobic001G307300 Sobic009G215600 Sobic009G215600 Sobic009G119400--Sobic009G215600 Sobic007G009600 Sobic007G009600 Sobic009G119400--Sobic007G009600 Sobic004G060700 Sobic004G060700 Sobic009G119400--Sobic004G060700 Sobic007G170800 Sobic007G170800 Sobic009G119400--Sobic007G170800 Sobic008G163200 Sobic008G163200 Sobic009G119400--Sobic008G163200 Sobic005G110436 Sobic005G110436 Sobic009G119400--Sobic005G110436 Sobic001G275600--Sobic009G151000 Sobic001G275600--Sobic008G163000 Sobic001G275600--Sobic009G215600 Sobic001G275600--Sobic001G307300 Sobic001G275600--Sobic006G001000 Sobic001G275600--Sobic009G119400 Sobic001G275600--Sobic008G173200 Sobic001G275600--Sobic010G196400 Sobic001G275600--Sobic002G141100 Sobic008G163000--Sobic001G275600 Sobic008G163000--Sobic006G001000 Sobic008G163000--Sobic009G119400 Sobic004G344200 Sobic004G344200 Sobic008G163000--Sobic004G344200 Sobic008G164900 Sobic008G164900 Sobic008G163000--Sobic008G164900 Sobic008G163000--Sobic009G151000 Sobic008G163000--Sobic010G196400 Sobic002G003200 Sobic002G003200 Sobic008G163000--Sobic002G003200 Sobic008G163000--Sobic003G108000 Sobic010G086800 Sobic010G086800 Sobic004G168700--Sobic010G086800 Sobic009G032600 Sobic009G032600 Sobic004G168700--Sobic009G032600 Sobic009G232200 Sobic009G232200 Sobic004G168700--Sobic009G232200 Sobic008G082400 Sobic008G082400 Sobic004G168700--Sobic008G082400 Sobic009G211800 Sobic009G211800 Sobic004G168700--Sobic009G211800 Sobic002G072200 Sobic002G072200 Sobic004G168700--Sobic002G072200 Sobic004G243800 Sobic004G243800 Sobic004G168700--Sobic004G243800 Sobic009G226900 Sobic009G226900 Sobic004G168700--Sobic009G226900 Sobic004G168700--Sobic003G108000 Sobic006G001000--Sobic001G275600 Sobic006G001000--Sobic008G163000 Sobic006G001000--Sobic009G151000 Sobic006G001000--Sobic002G003200 Sobic003G352800 Sobic003G352800 Sobic006G001000--Sobic003G352800 Sobic006G001000--Sobic003G108000 Sobic006G001000--Sobic009G215600 Sobic006G001000--Sobic004G344200 Sobic003G427900 Sobic003G427900 Sobic006G001000--Sobic003G427900 Sobic001G307300--Sobic009G119400 Sobic001G307300--Sobic001G336800 Sobic001G307300--Sobic010G196400 Sobic001G307300--Sobic001G275600 Sobic001G307300--Sobic009G215600 Sobic002G397400 Sobic002G397400 Sobic001G307300--Sobic002G397400 Sobic001G307300--Sobic002G351000 Sobic001G307300--Sobic009G151000 Sobic001G307300--Sobic001G265900 Sobic003G085200--Sobic010G196400 Sobic003G085200--Sobic009G162800 Sobic003G085200--Sobic001G307300 Sobic003G085200--Sobic001G250200 Sobic003G085200--Sobic003G108000 Sobic003G085200--Sobic009G119400 Sobic003G085200--Sobic006G166800 Sobic003G085200--Sobic003G352800 Sobic003G085200--Sobic001G265900
Octagon: transcription factors


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