Gene annotation
Transcriptome id Sobic.003G071400.1
Synonym PAS2, PEP, Sb03g006050
Functional annotation expressed protein
UniProt A0A1B6Q1S9
Pfam PF04387
Panther DB PTHR11035
NCBI CDD KOG3187; Protein tyrosine phosphatase-like protein PTPLA (contains Pro instead of catalytic Arg)
KEGG Orthology K10703; HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G10480 : Protein-tyrosine phosphatase-like, PTPLA
RAP-DB (Rice) LOC_Os04g20280.1 : expressed protein
MaizeGDB (Corn) Zm00025a023456
Brachypodium KQK02729
Barley HORVU3Hr1G013730.3 , HORVU3Hr1G013730.2 , HORVU3Hr1G013730.1 , HORVU3Hr1G013730.7 , HORVU3Hr1G013730.6 , HORVU3Hr1G013730.5 , HORVU3Hr1G013730.4 , HORVU3Hr1G013730.9 , HORVU3Hr1G013730.8 , HORVU3Hr1G013730.11 , HORVU3Hr1G013730.10 , HORVU3Hr1G013750.1 , HORVU3Hr1G013750.3 , HORVU3Hr1G013750.2
Wheat TraesCS3D02G074900 , TraesCS3D02G075500 , TraesCS3D02G075600 , TraesCS3A02G075500 , TraesCS3B02G089000 , TraesCS3B02G089000
Populus -


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cDNA sequences
Sobic.003G071400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G203900 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
2 Sobic.001G405000 MRH1, putative, expressed -
3 Sobic.004G168700 harpin-induced protein 1 domain containing protein, expressed -
4 Sobic.001G376700 blue-light photoreceptor PHR2, putative, expressed -
5 Sobic.009G055900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
6 Sobic.003G108000 expressed protein -
7 Sobic.002G003200 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.003G420900 S-formylglutathione hydrolase, putative, expressed K01070: frmB, ESD, S-formylglutathione hydrolase
9 Sobic.004G319800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chaperonin, putative, expressed K04078: groES, chaperonin GroES
10 Sobic.008G143600 expressed protein -
11 Sobic.003G098600 expressed protein -
12 Sobic.008G075200 2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed K01627: 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase)
13 Sobic.001G543700 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
14 Sobic.003G071600 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed K10258: TER, TSC13, very-long-chain enoyl-CoA reductase
15 Sobic.004G243400 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
16 Sobic.007G026200 heat shock protein DnaJ, putative, expressed -
17 Sobic.007G166600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper/zinc superoxide dismutase, putative, expressed K04565: superoxide dismutase, Cu-Zn family
18 Sobic.008G116400 acyl carrier protein, putative, expressed -
19 Sobic.001G296400 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
20 Sobic.008G164900 membrane associated DUF588 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G071400 Sobic003G071400 Sobic004G203900 Sobic004G203900 Sobic003G071400--Sobic004G203900 Sobic001G405000 Sobic001G405000 Sobic003G071400--Sobic001G405000 Sobic004G168700 Sobic004G168700 Sobic003G071400--Sobic004G168700 Sobic001G376700 Sobic001G376700 Sobic003G071400--Sobic001G376700 Sobic009G055900 Sobic009G055900 Sobic003G071400--Sobic009G055900 Sobic003G108000 Sobic003G108000 Sobic003G071400--Sobic003G108000 Sobic002G003200 Sobic002G003200 Sobic003G071400--Sobic002G003200 Sobic003G420900 Sobic003G420900 Sobic003G071400--Sobic003G420900 Sobic004G319800 Sobic004G319800 Sobic003G071400--Sobic004G319800 Sobic004G203900--Sobic003G071400 Sobic004G265600 Sobic004G265600 Sobic004G203900--Sobic004G265600 Sobic003G151300 Sobic003G151300 Sobic004G203900--Sobic003G151300 Sobic009G032600 Sobic009G032600 Sobic004G203900--Sobic009G032600 Sobic006G038200 Sobic006G038200 Sobic004G203900--Sobic006G038200 Sobic008G000100 Sobic008G000100 Sobic004G203900--Sobic008G000100 Sobic002G347400 Sobic002G347400 Sobic004G203900--Sobic002G347400 Sobic003G098600 Sobic003G098600 Sobic004G203900--Sobic003G098600 Sobic004G203900--Sobic004G168700 Sobic001G405000--Sobic009G055900 Sobic001G405000--Sobic002G003200 Sobic004G243400 Sobic004G243400 Sobic001G405000--Sobic004G243400 Sobic001G405000--Sobic003G071400 Sobic008G163000 Sobic008G163000 Sobic001G405000--Sobic008G163000 Sobic001G275600 Sobic001G275600 Sobic001G405000--Sobic001G275600 Sobic002G201100 Sobic002G201100 Sobic001G405000--Sobic002G201100 Sobic002G377300 Sobic002G377300 Sobic001G405000--Sobic002G377300 Sobic001G405000--Sobic004G168700 Sobic010G086800 Sobic010G086800 Sobic004G168700--Sobic010G086800 Sobic004G168700--Sobic009G032600 Sobic009G232200 Sobic009G232200 Sobic004G168700--Sobic009G232200 Sobic008G082400 Sobic008G082400 Sobic004G168700--Sobic008G082400 Sobic009G211800 Sobic009G211800 Sobic004G168700--Sobic009G211800 Sobic002G072200 Sobic002G072200 Sobic004G168700--Sobic002G072200 Sobic004G243800 Sobic004G243800 Sobic004G168700--Sobic004G243800 Sobic009G226900 Sobic009G226900 Sobic004G168700--Sobic009G226900 Sobic004G168700--Sobic003G108000 Sobic004G296800 Sobic004G296800 Sobic001G376700--Sobic004G296800 Sobic006G084500 Sobic006G084500 Sobic001G376700--Sobic006G084500 Sobic004G044200 Sobic004G044200 Sobic001G376700--Sobic004G044200 Sobic009G124000 Sobic009G124000 Sobic001G376700--Sobic009G124000 Sobic001G376700--Sobic003G420900 Sobic003G292300 Sobic003G292300 Sobic001G376700--Sobic003G292300 Sobic009G180800 Sobic009G180800 Sobic001G376700--Sobic009G180800 Sobic008G123600 Sobic008G123600 Sobic001G376700--Sobic008G123600 Sobic009G001500 Sobic009G001500 Sobic001G376700--Sobic009G001500 Sobic008G143600 Sobic008G143600 Sobic009G055900--Sobic008G143600 Sobic009G055900--Sobic002G377300 Sobic009G055900--Sobic001G405000 Sobic004G109000 Sobic004G109000 Sobic009G055900--Sobic004G109000 Sobic009G059100 Sobic009G059100 Sobic009G055900--Sobic009G059100 Sobic006G001400 Sobic006G001400 Sobic009G055900--Sobic006G001400 Sobic006G060500 Sobic006G060500 Sobic009G055900--Sobic006G060500 Sobic009G055900--Sobic004G243400 Sobic001G389600 Sobic001G389600 Sobic009G055900--Sobic001G389600 Sobic009G151000 Sobic009G151000 Sobic003G108000--Sobic009G151000 Sobic010G196400 Sobic010G196400 Sobic003G108000--Sobic010G196400 Sobic009G119400 Sobic009G119400 Sobic003G108000--Sobic009G119400 Sobic003G108000--Sobic001G275600 Sobic003G108000--Sobic008G163000 Sobic003G108000--Sobic004G168700 Sobic006G001000 Sobic006G001000 Sobic003G108000--Sobic006G001000 Sobic001G307300 Sobic001G307300 Sobic003G108000--Sobic001G307300 Sobic003G085200 Sobic003G085200 Sobic003G108000--Sobic003G085200 Sobic003G352800 Sobic003G352800 Sobic002G003200--Sobic003G352800 Sobic009G153800 Sobic009G153800 Sobic002G003200--Sobic009G153800 Sobic004G344200 Sobic004G344200 Sobic002G003200--Sobic004G344200 Sobic002G003200--Sobic001G405000 Sobic008G059800 Sobic008G059800 Sobic002G003200--Sobic008G059800 Sobic002G003200--Sobic006G001000 Sobic009G162500 Sobic009G162500 Sobic002G003200--Sobic009G162500 Sobic001G066900 Sobic001G066900 Sobic002G003200--Sobic001G066900 Sobic002G003200--Sobic008G163000 Sobic003G420900--Sobic001G376700 Sobic003G420900--Sobic004G296800 Sobic003G165800 Sobic003G165800 Sobic003G420900--Sobic003G165800 Sobic009G231100 Sobic009G231100 Sobic003G420900--Sobic009G231100 Sobic002G333100 Sobic002G333100 Sobic003G420900--Sobic002G333100 Sobic004G275600 Sobic004G275600 Sobic003G420900--Sobic004G275600 Sobic010G134500 Sobic010G134500 Sobic003G420900--Sobic010G134500 Sobic003G261200 Sobic003G261200 Sobic003G420900--Sobic003G261200 Sobic001G543700 Sobic001G543700 Sobic003G420900--Sobic001G543700 Sobic008G181400 Sobic008G181400 Sobic004G319800--Sobic008G181400 Sobic008G075200 Sobic008G075200 Sobic004G319800--Sobic008G075200 Sobic007G166600 Sobic007G166600 Sobic004G319800--Sobic007G166600 Sobic009G002900 Sobic009G002900 Sobic004G319800--Sobic009G002900 Sobic001G379100 Sobic001G379100 Sobic004G319800--Sobic001G379100 Sobic002G317600 Sobic002G317600 Sobic004G319800--Sobic002G317600 Sobic004G319800--Sobic006G084500 Sobic007G026200 Sobic007G026200 Sobic004G319800--Sobic007G026200 Sobic003G333700 Sobic003G333700 Sobic004G319800--Sobic003G333700
Octagon: transcription factors


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