Gene annotation
Transcriptome id Sobic.001G378400.1
Synonym Sb01g035900, ATL3
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5X0R0
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF147
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G72310 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g09310.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK21768
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G174600 protein kinase, putative, expressed -
2 Sobic.005G094400 DUF581 domain containing protein, expressed -
3 Sobic.007G047200 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
4 Sobic.004G317401 - -
5 Sobic.009G240100 receptor-like protein kinase homolog RK20-1, putative, expressed -
6 Sobic.002G091700 MLO domain containing protein, putative, expressed K08472: mlo protein
7 Sobic.009G233100 AP2 domain containing protein, expressed -
8 Sobic.010G184500 NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
9 Sobic.004G003100 nodulin, putative, expressed -
10 Sobic.007G079500 hypothetical protein -
11 Sobic.002G281100 plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.005G228501 - -
13 Sobic.001G348300 expressed protein -
14 Sobic.003G124900 serpin domain containing protein, putative, expressed K13963: serpin B
15 Sobic.002G229400 OsSCP43 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
16 Sobic.002G273400 "domain confirmed by Pfam database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA26 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
17 Sobic.010G253250 - -
18 Sobic.004G279900 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
19 Sobic.002G334200 CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
20 Sobic.006G004900 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase


Gene co-expression network
sample Sobic001G378400 Sobic001G378400 Sobic002G174600 Sobic002G174600 Sobic001G378400--Sobic002G174600 Sobic005G094400 Sobic005G094400 Sobic001G378400--Sobic005G094400 Sobic007G047200 Sobic007G047200 Sobic001G378400--Sobic007G047200 Sobic004G317401 Sobic004G317401 Sobic001G378400--Sobic004G317401 Sobic009G240100 Sobic009G240100 Sobic001G378400--Sobic009G240100 Sobic002G091700 Sobic002G091700 Sobic001G378400--Sobic002G091700 Sobic009G233100 Sobic009G233100 Sobic001G378400--Sobic009G233100 Sobic010G184500 Sobic010G184500 Sobic001G378400--Sobic010G184500 Sobic004G003100 Sobic004G003100 Sobic001G378400--Sobic004G003100 Sobic002G174600--Sobic009G240100 Sobic004G279900 Sobic004G279900 Sobic002G174600--Sobic004G279900 Sobic007G176300 Sobic007G176300 Sobic002G174600--Sobic007G176300 Sobic003G188700 Sobic003G188700 Sobic002G174600--Sobic003G188700 Sobic008G112700 Sobic008G112700 Sobic002G174600--Sobic008G112700 Sobic007G191400 Sobic007G191400 Sobic002G174600--Sobic007G191400 Sobic002G174600--Sobic007G047200 Sobic010G043350 Sobic010G043350 Sobic002G174600--Sobic010G043350 Sobic003G199650 Sobic003G199650 Sobic002G174600--Sobic003G199650 Sobic002G063566 Sobic002G063566 Sobic005G094400--Sobic002G063566 Sobic005G094400--Sobic002G091700 Sobic010G253250 Sobic010G253250 Sobic005G094400--Sobic010G253250 Sobic002G417101 Sobic002G417101 Sobic005G094400--Sobic002G417101 Sobic005G062300 Sobic005G062300 Sobic005G094400--Sobic005G062300 Sobic004G121500 Sobic004G121500 Sobic005G094400--Sobic004G121500 Sobic007G034650 Sobic007G034650 Sobic005G094400--Sobic007G034650 Sobic003G318500 Sobic003G318500 Sobic005G094400--Sobic003G318500 Sobic006G075650 Sobic006G075650 Sobic005G094400--Sobic006G075650 Sobic007G047200--Sobic009G240100 Sobic006G252532 Sobic006G252532 Sobic007G047200--Sobic006G252532 Sobic003G124900 Sobic003G124900 Sobic007G047200--Sobic003G124900 Sobic003G380700 Sobic003G380700 Sobic007G047200--Sobic003G380700 Sobic003G059600 Sobic003G059600 Sobic007G047200--Sobic003G059600 Sobic007G047200--Sobic004G279900 Sobic006G130700 Sobic006G130700 Sobic007G047200--Sobic006G130700 Sobic007G047200--Sobic010G043350 Sobic007G047200--Sobic003G199650 Sobic004G317401--Sobic007G191400 Sobic004G202900 Sobic004G202900 Sobic004G317401--Sobic004G202900 Sobic004G317401--Sobic009G240100 Sobic004G317401--Sobic007G176300 Sobic004G317401--Sobic003G059600 Sobic004G266100 Sobic004G266100 Sobic004G317401--Sobic004G266100 Sobic005G227900 Sobic005G227900 Sobic004G317401--Sobic005G227900 Sobic002G373700 Sobic002G373700 Sobic004G317401--Sobic002G373700 Sobic010G019600 Sobic010G019600 Sobic004G317401--Sobic010G019600 Sobic009G240100--Sobic006G130700 Sobic009G240100--Sobic007G047200 Sobic009G240100--Sobic002G174600 Sobic009G240100--Sobic007G176300 Sobic009G240100--Sobic003G059600 Sobic009G240100--Sobic010G043350 Sobic009G240100--Sobic006G252532 Sobic008G014601 Sobic008G014601 Sobic009G240100--Sobic008G014601 Sobic009G240100--Sobic007G191400 Sobic002G091700--Sobic005G094400 Sobic002G091700--Sobic002G063566 Sobic002G091700--Sobic010G253250 Sobic002G229400 Sobic002G229400 Sobic002G091700--Sobic002G229400 Sobic002G091700--Sobic005G062300 Sobic002G091700--Sobic002G417101 Sobic002G091700--Sobic004G121500 Sobic005G014100 Sobic005G014100 Sobic002G091700--Sobic005G014100 Sobic002G273400 Sobic002G273400 Sobic002G091700--Sobic002G273400 Sobic009G233100--Sobic004G003100 Sobic005G110514 Sobic005G110514 Sobic009G233100--Sobic005G110514 Sobic004G308500 Sobic004G308500 Sobic009G233100--Sobic004G308500 Sobic005G206000 Sobic005G206000 Sobic009G233100--Sobic005G206000 Sobic001G301000 Sobic001G301000 Sobic009G233100--Sobic001G301000 Sobic003G053200 Sobic003G053200 Sobic009G233100--Sobic003G053200 Sobic010G031700 Sobic010G031700 Sobic009G233100--Sobic010G031700 Sobic007G037600 Sobic007G037600 Sobic009G233100--Sobic007G037600 Sobic006G277700 Sobic006G277700 Sobic009G233100--Sobic006G277700 Sobic001G428600 Sobic001G428600 Sobic010G184500--Sobic001G428600 Sobic001G108800 Sobic001G108800 Sobic010G184500--Sobic001G108800 Sobic004G011100 Sobic004G011100 Sobic010G184500--Sobic004G011100 Sobic001G176300 Sobic001G176300 Sobic010G184500--Sobic001G176300 Sobic003G053300 Sobic003G053300 Sobic010G184500--Sobic003G053300 Sobic010G252401 Sobic010G252401 Sobic010G184500--Sobic010G252401 Sobic001G039200 Sobic001G039200 Sobic010G184500--Sobic001G039200 Sobic006G150700 Sobic006G150700 Sobic010G184500--Sobic006G150700 Sobic004G310200 Sobic004G310200 Sobic010G184500--Sobic004G310200 Sobic004G003100--Sobic005G110514 Sobic004G003100--Sobic009G233100 Sobic003G007400 Sobic003G007400 Sobic004G003100--Sobic003G007400 Sobic010G013000 Sobic010G013000 Sobic004G003100--Sobic010G013000 Sobic004G003100--Sobic005G206000 Sobic004G003100--Sobic004G308500 Sobic009G095800 Sobic009G095800 Sobic004G003100--Sobic009G095800 Sobic004G003100--Sobic001G301000 Sobic007G186500 Sobic007G186500 Sobic004G003100--Sobic007G186500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.