Gene annotation
Transcriptome id Sobic.001G449500.1
Synonym Sb01g042250
Functional annotation ternary complex factor MIP1, putative, expressed
UniProt C5WRT6
Pfam PF14389 PF04784
Panther DB PTHR23054 PTHR23054:SF31
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G23700 : Protein of unknown function, DUF547
RAP-DB (Rice) LOC_Os03g13130.3 : ternary complex factor MIP1, putative, expressed
MaizeGDB (Corn) Zm00025a001395 , Zm00025a052999
Brachypodium PNT77837 , PNT77836 , KQK22777 , KQK22776 , KQK22778
Barley HORVU4Hr1G066210.35 , HORVU4Hr1G066210.34 , HORVU4Hr1G066210.37 , HORVU4Hr1G066210.36 , HORVU4Hr1G066210.31 , HORVU4Hr1G066210.30 , HORVU4Hr1G066210.33 , HORVU4Hr1G066210.32 , HORVU4Hr1G066210.39 , HORVU4Hr1G066210.38 , HORVU4Hr1G066210.28 , HORVU4Hr1G066210.29 , HORVU4Hr1G066210.22 , HORVU4Hr1G066210.20 , HORVU4Hr1G066210.26 , HORVU4Hr1G066210.27 , HORVU4Hr1G066210.24 , HORVU4Hr1G066210.25 , HORVU4Hr1G066210.3 , HORVU4Hr1G066210.2 , HORVU4Hr1G066210.1 , HORVU4Hr1G066210.6 , HORVU4Hr1G066210.5 , HORVU4Hr1G066210.4 , HORVU4Hr1G066210.9 , HORVU4Hr1G066210.8 , HORVU4Hr1G066210.48 , HORVU4Hr1G066210.49 , HORVU4Hr1G066210.44 , HORVU4Hr1G066210.45 , HORVU4Hr1G066210.46 , HORVU4Hr1G066210.47 , HORVU4Hr1G066210.40 , HORVU4Hr1G066210.41 , HORVU4Hr1G066210.42 , HORVU4Hr1G066210.43 , HORVU4Hr1G066210.13 , HORVU4Hr1G066210.12 , HORVU4Hr1G066210.11 , HORVU4Hr1G066210.10 , HORVU4Hr1G066210.17 , HORVU4Hr1G066210.16 , HORVU4Hr1G066210.15 , HORVU4Hr1G066210.14 , HORVU4Hr1G066210.19 , HORVU4Hr1G066210.18
Wheat TraesCS4D02G238500 , TraesCS4D02G238500 , TraesCS4A02G061600 , TraesCS4B02G237000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G073800 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -
2 Sobic.009G166400 MCM8 - Putative minichromosome maintenance MCM family subunit 8, expressed K10737: DNA helicase MCM8
3 Sobic.004G266100 expressed protein -
4 Sobic.002G095200 expressed protein -
5 Sobic.003G341900 GDSL-like lipase/acylhydrolase, putative, expressed -
6 Sobic.001G088400 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
7 Sobic.009G112800 WD domain, G-beta repeat domain containing protein, expressed -
8 Sobic.001G534000 kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
9 Sobic.010G174000 1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
10 Sobic.006G116200 receptor protein kinase CLAVATA1 precursor, putative, expressed -
11 Sobic.001G032850 - -
12 Sobic.004G140900 - -
13 Sobic.006G090900 endoglucanase, putative, expressed -
14 Sobic.009G166650 - -
15 Sobic.006G165200 amino acid permease family protein, putative, expressed -
16 Sobic.002G038500 tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
17 Sobic.002G321200 vrga1, putative, expressed -
18 Sobic.009G147700 expressed protein -
19 Sobic.003G301050 - -
20 Sobic.001G045100 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic001G449500 Sobic001G449500 Sobic004G073800 Sobic004G073800 Sobic001G449500--Sobic004G073800 Sobic009G166400 Sobic009G166400 Sobic001G449500--Sobic009G166400 Sobic004G266100 Sobic004G266100 Sobic001G449500--Sobic004G266100 Sobic002G095200 Sobic002G095200 Sobic001G449500--Sobic002G095200 Sobic003G341900 Sobic003G341900 Sobic001G449500--Sobic003G341900 Sobic001G088400 Sobic001G088400 Sobic001G449500--Sobic001G088400 Sobic009G112800 Sobic009G112800 Sobic001G449500--Sobic009G112800 Sobic001G534000 Sobic001G534000 Sobic001G449500--Sobic001G534000 Sobic010G174000 Sobic010G174000 Sobic001G449500--Sobic010G174000 Sobic009G128400 Sobic009G128400 Sobic004G073800--Sobic009G128400 Sobic004G073800--Sobic001G449500 Sobic004G312400 Sobic004G312400 Sobic004G073800--Sobic004G312400 Sobic004G073800--Sobic001G088400 Sobic001G221601 Sobic001G221601 Sobic004G073800--Sobic001G221601 Sobic004G073800--Sobic009G166400 Sobic009G166650 Sobic009G166650 Sobic004G073800--Sobic009G166650 Sobic002G390700 Sobic002G390700 Sobic004G073800--Sobic002G390700 Sobic007G067900 Sobic007G067900 Sobic004G073800--Sobic007G067900 Sobic009G166400--Sobic009G166650 Sobic009G097500 Sobic009G097500 Sobic009G166400--Sobic009G097500 Sobic002G305900 Sobic002G305900 Sobic009G166400--Sobic002G305900 Sobic004G272950 Sobic004G272950 Sobic009G166400--Sobic004G272950 SobicK031300 SobicK031300 Sobic009G166400--SobicK031300 SobicK043600 SobicK043600 Sobic009G166400--SobicK043600 Sobic001G455300 Sobic001G455300 Sobic009G166400--Sobic001G455300 Sobic003G168600 Sobic003G168600 Sobic009G166400--Sobic003G168600 Sobic009G209650 Sobic009G209650 Sobic009G166400--Sobic009G209650 Sobic003G105200 Sobic003G105200 Sobic004G266100--Sobic003G105200 Sobic003G186066 Sobic003G186066 Sobic004G266100--Sobic003G186066 Sobic003G059600 Sobic003G059600 Sobic004G266100--Sobic003G059600 Sobic009G229500 Sobic009G229500 Sobic004G266100--Sobic009G229500 Sobic006G232100 Sobic006G232100 Sobic004G266100--Sobic006G232100 Sobic004G202900 Sobic004G202900 Sobic004G266100--Sobic004G202900 Sobic004G317401 Sobic004G317401 Sobic004G266100--Sobic004G317401 Sobic001G491500 Sobic001G491500 Sobic004G266100--Sobic001G491500 Sobic010G229300 Sobic010G229300 Sobic004G266100--Sobic010G229300 Sobic006G116200 Sobic006G116200 Sobic002G095200--Sobic006G116200 Sobic003G229650 Sobic003G229650 Sobic002G095200--Sobic003G229650 Sobic006G234500 Sobic006G234500 Sobic002G095200--Sobic006G234500 Sobic004G061300 Sobic004G061300 Sobic002G095200--Sobic004G061300 Sobic001G325500 Sobic001G325500 Sobic002G095200--Sobic001G325500 Sobic009G202101 Sobic009G202101 Sobic002G095200--Sobic009G202101 Sobic004G203666 Sobic004G203666 Sobic002G095200--Sobic004G203666 Sobic005G110517 Sobic005G110517 Sobic002G095200--Sobic005G110517 Sobic004G026900 Sobic004G026900 Sobic002G095200--Sobic004G026900 Sobic005G187700 Sobic005G187700 Sobic003G341900--Sobic005G187700 Sobic009G173700 Sobic009G173700 Sobic003G341900--Sobic009G173700 Sobic007G149500 Sobic007G149500 Sobic003G341900--Sobic007G149500 Sobic003G072000 Sobic003G072000 Sobic003G341900--Sobic003G072000 Sobic004G305733 Sobic004G305733 Sobic003G341900--Sobic004G305733 Sobic001G100300 Sobic001G100300 Sobic003G341900--Sobic001G100300 Sobic001G145550 Sobic001G145550 Sobic003G341900--Sobic001G145550 Sobic009G213150 Sobic009G213150 Sobic003G341900--Sobic009G213150 Sobic002G176700 Sobic002G176700 Sobic003G341900--Sobic002G176700 Sobic001G088400--Sobic007G067900 Sobic002G113600 Sobic002G113600 Sobic001G088400--Sobic002G113600 Sobic001G088400--Sobic004G073800 Sobic009G192700 Sobic009G192700 Sobic001G088400--Sobic009G192700 Sobic006G137300 Sobic006G137300 Sobic001G088400--Sobic006G137300 Sobic010G213000 Sobic010G213000 Sobic001G088400--Sobic010G213000 Sobic002G294300 Sobic002G294300 Sobic001G088400--Sobic002G294300 Sobic005G164900 Sobic005G164900 Sobic001G088400--Sobic005G164900 Sobic010G158832 Sobic010G158832 Sobic001G088400--Sobic010G158832 Sobic002G290800 Sobic002G290800 Sobic009G112800--Sobic002G290800 Sobic004G279400 Sobic004G279400 Sobic009G112800--Sobic004G279400 Sobic007G122400 Sobic007G122400 Sobic009G112800--Sobic007G122400 Sobic001G285100 Sobic001G285100 Sobic009G112800--Sobic001G285100 Sobic007G194000 Sobic007G194000 Sobic009G112800--Sobic007G194000 Sobic009G112800--Sobic002G176700 Sobic010G054150 Sobic010G054150 Sobic009G112800--Sobic010G054150 Sobic009G112800--Sobic001G449500 Sobic003G276400 Sobic003G276400 Sobic009G112800--Sobic003G276400 Sobic001G430200 Sobic001G430200 Sobic001G534000--Sobic001G430200 Sobic002G269700 Sobic002G269700 Sobic001G534000--Sobic002G269700 Sobic006G196700 Sobic006G196700 Sobic001G534000--Sobic006G196700 Sobic002G152400 Sobic002G152400 Sobic001G534000--Sobic002G152400 Sobic006G281300 Sobic006G281300 Sobic001G534000--Sobic006G281300 Sobic007G218550 Sobic007G218550 Sobic001G534000--Sobic007G218550 Sobic002G213050 Sobic002G213050 Sobic001G534000--Sobic002G213050 Sobic004G055400 Sobic004G055400 Sobic001G534000--Sobic004G055400 Sobic006G018500 Sobic006G018500 Sobic001G534000--Sobic006G018500 Sobic008G056000 Sobic008G056000 Sobic010G174000--Sobic008G056000 Sobic002G163400 Sobic002G163400 Sobic010G174000--Sobic002G163400 Sobic003G251000 Sobic003G251000 Sobic010G174000--Sobic003G251000 Sobic009G030501 Sobic009G030501 Sobic010G174000--Sobic009G030501 Sobic006G149900 Sobic006G149900 Sobic010G174000--Sobic006G149900 Sobic004G072600 Sobic004G072600 Sobic010G174000--Sobic004G072600 Sobic001G440401 Sobic001G440401 Sobic010G174000--Sobic001G440401 Sobic010G011100 Sobic010G011100 Sobic010G174000--Sobic010G011100 Sobic006G223601 Sobic006G223601 Sobic010G174000--Sobic006G223601
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.