Gene annotation
Transcriptome id Sobic.002G038500.5,Sobic.002G038500.1,Sobic.002G038500.3,Sobic.002G038500.4,Sobic.002G038500.6
Synonym ATHAP2B, HAP2B, Sb02g003320, NF-YA2, Nuclear Factor Y, UNE8, SbNF-YA4
Functional annotation tentative name (PubMedID : 31536532)
nuclear transcription factor Y subunit, putative, expressed
UniProt A0A1W0W231 , A0A1W0W247 , A0A1W0W250 , A0A1W0W234 , A0A1B6Q940
Pfam PF02045
Panther DB PTHR12632 PTHR12632:SF9
NCBI CDD -
KEGG Orthology K08064; NFYA, nuclear transcription factor Y, alpha
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G05690 : nuclear factor Y, subunit A4,nuclear factor Y, subunit A2
RAP-DB (Rice) LOC_Os07g06470.2,LOC_Os03g48970.3,LOC_Os12g42400.3,LOC_Os03g48970.2 : nuclear transcription factor Y subunit, putative, expressed
MaizeGDB (Corn) Zm00025a016153
Brachypodium -
Barley HORVU4Hr1G005670.14 , HORVU4Hr1G005670.10 , HORVU4Hr1G005670.12 , HORVU4Hr1G005670.13 , HORVU4Hr1G005670.6 , HORVU4Hr1G005670.7 , HORVU4Hr1G005670.4 , HORVU4Hr1G005670.2 , HORVU4Hr1G005670.3 , HORVU4Hr1G005670.1
Wheat TraesCS4A02G277300 , TraesCS4D02G033700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G181800 HOTHEAD precursor, putative, expressed K15403: ACE, fatty acid omega-hydroxy dehydrogenase
2 Sobic.006G137300 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
3 Sobic.004G073800 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -
4 Sobic.010G078400 expressed protein -
5 Sobic.008G072050 - -
6 Sobic.007G067900 expressed protein -
7 Sobic.001G449500 ternary complex factor MIP1, putative, expressed -
8 Sobic.009G147700 expressed protein -
9 Sobic.001G221601 - -
10 Sobic.006G234500 OsFBD10 - F-box and FBD domain containing protein, expressed -
11 Sobic.010G206400 expressed protein -
12 Sobic.002G095200 expressed protein -
13 Sobic.006G140801 - -
14 Sobic.003G100400 TOO MANY MOUTHS precursor, putative, expressed -
15 Sobic.009G166400 MCM8 - Putative minichromosome maintenance MCM family subunit 8, expressed K10737: DNA helicase MCM8
16 Sobic.006G084800 - -
17 Sobic.007G214900 EDM2, putative, expressed -
18 Sobic.009G112800 WD domain, G-beta repeat domain containing protein, expressed -
19 Sobic.001G088400 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
20 Sobic.002G113600 rhoGAP domain containing protein, expressed -


Gene co-expression network
sample Sobic002G038500 Sobic002G038500 Sobic002G181800 Sobic002G181800 Sobic002G038500--Sobic002G181800 Sobic006G137300 Sobic006G137300 Sobic002G038500--Sobic006G137300 Sobic004G073800 Sobic004G073800 Sobic002G038500--Sobic004G073800 Sobic010G078400 Sobic010G078400 Sobic002G038500--Sobic010G078400 Sobic008G072050 Sobic008G072050 Sobic002G038500--Sobic008G072050 Sobic007G067900 Sobic007G067900 Sobic002G038500--Sobic007G067900 Sobic001G449500 Sobic001G449500 Sobic002G038500--Sobic001G449500 Sobic009G147700 Sobic009G147700 Sobic002G038500--Sobic009G147700 Sobic001G221601 Sobic001G221601 Sobic002G038500--Sobic001G221601 Sobic002G181800--Sobic002G038500 Sobic002G181800--Sobic006G137300 Sobic002G181800--Sobic007G067900 Sobic002G181800--Sobic009G147700 Sobic010G206400 Sobic010G206400 Sobic002G181800--Sobic010G206400 Sobic009G112800 Sobic009G112800 Sobic002G181800--Sobic009G112800 Sobic002G181800--Sobic001G221601 Sobic002G181800--Sobic004G073800 Sobic007G122400 Sobic007G122400 Sobic002G181800--Sobic007G122400 Sobic001G001700 Sobic001G001700 Sobic006G137300--Sobic001G001700 Sobic006G137300--Sobic010G078400 Sobic008G093700 Sobic008G093700 Sobic006G137300--Sobic008G093700 Sobic001G088400 Sobic001G088400 Sobic006G137300--Sobic001G088400 Sobic006G137300--Sobic002G181800 Sobic001G088000 Sobic001G088000 Sobic006G137300--Sobic001G088000 Sobic006G137300--Sobic002G038500 Sobic005G163600 Sobic005G163600 Sobic006G137300--Sobic005G163600 Sobic005G164900 Sobic005G164900 Sobic006G137300--Sobic005G164900 Sobic009G128400 Sobic009G128400 Sobic004G073800--Sobic009G128400 Sobic004G073800--Sobic001G449500 Sobic004G312400 Sobic004G312400 Sobic004G073800--Sobic004G312400 Sobic004G073800--Sobic001G088400 Sobic004G073800--Sobic001G221601 Sobic009G166400 Sobic009G166400 Sobic004G073800--Sobic009G166400 Sobic009G166650 Sobic009G166650 Sobic004G073800--Sobic009G166650 Sobic002G390700 Sobic002G390700 Sobic004G073800--Sobic002G390700 Sobic004G073800--Sobic007G067900 Sobic010G078400--Sobic002G390700 Sobic003G092000 Sobic003G092000 Sobic010G078400--Sobic003G092000 Sobic010G078400--Sobic006G137300 Sobic010G078400--Sobic001G001700 Sobic002G239800 Sobic002G239800 Sobic010G078400--Sobic002G239800 Sobic010G078400--Sobic005G164900 Sobic010G078400--Sobic001G088000 Sobic010G078400--Sobic002G038500 Sobic002G074500 Sobic002G074500 Sobic010G078400--Sobic002G074500 Sobic005G024600 Sobic005G024600 Sobic008G072050--Sobic005G024600 Sobic004G041000 Sobic004G041000 Sobic008G072050--Sobic004G041000 Sobic003G399900 Sobic003G399900 Sobic008G072050--Sobic003G399900 Sobic001G307450 Sobic001G307450 Sobic008G072050--Sobic001G307450 Sobic007G107200 Sobic007G107200 Sobic008G072050--Sobic007G107200 Sobic003G289000 Sobic003G289000 Sobic008G072050--Sobic003G289000 Sobic003G384100 Sobic003G384100 Sobic008G072050--Sobic003G384100 Sobic007G143900 Sobic007G143900 Sobic008G072050--Sobic007G143900 Sobic003G303000 Sobic003G303000 Sobic008G072050--Sobic003G303000 Sobic006G276900 Sobic006G276900 Sobic007G067900--Sobic006G276900 Sobic006G140801 Sobic006G140801 Sobic007G067900--Sobic006G140801 Sobic010G213000 Sobic010G213000 Sobic007G067900--Sobic010G213000 Sobic001G135600 Sobic001G135600 Sobic007G067900--Sobic001G135600 Sobic007G067900--Sobic001G088400 Sobic007G067900--Sobic010G206400 Sobic002G206100 Sobic002G206100 Sobic007G067900--Sobic002G206100 Sobic002G113600 Sobic002G113600 Sobic007G067900--Sobic002G113600 Sobic007G067900--Sobic005G164900 Sobic001G449500--Sobic004G073800 Sobic001G449500--Sobic009G166400 Sobic004G266100 Sobic004G266100 Sobic001G449500--Sobic004G266100 Sobic002G095200 Sobic002G095200 Sobic001G449500--Sobic002G095200 Sobic003G341900 Sobic003G341900 Sobic001G449500--Sobic003G341900 Sobic001G449500--Sobic001G088400 Sobic001G449500--Sobic009G112800 Sobic001G534000 Sobic001G534000 Sobic001G449500--Sobic001G534000 Sobic010G174000 Sobic010G174000 Sobic001G449500--Sobic010G174000 Sobic001G100300 Sobic001G100300 Sobic009G147700--Sobic001G100300 Sobic009G173700 Sobic009G173700 Sobic009G147700--Sobic009G173700 Sobic006G228833 Sobic006G228833 Sobic009G147700--Sobic006G228833 Sobic009G235400 Sobic009G235400 Sobic009G147700--Sobic009G235400 Sobic006G235801 Sobic006G235801 Sobic009G147700--Sobic006G235801 Sobic006G045601 Sobic006G045601 Sobic009G147700--Sobic006G045601 Sobic007G183600 Sobic007G183600 Sobic009G147700--Sobic007G183600 Sobic002G297100 Sobic002G297100 Sobic009G147700--Sobic002G297100 Sobic009G147700--Sobic003G341900 Sobic001G221601--Sobic004G312400 Sobic001G221601--Sobic002G390700 Sobic004G064700 Sobic004G064700 Sobic001G221601--Sobic004G064700 Sobic001G221601--Sobic009G166650 Sobic001G221601--Sobic004G073800 Sobic003G107000 Sobic003G107000 Sobic001G221601--Sobic003G107000 Sobic001G221601--Sobic010G213000 Sobic001G221601--Sobic001G088400 Sobic001G221601--Sobic001G088000
Octagon: transcription factors


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