Gene annotation
| Transcriptome id | Sobic.003G100400.1 |
|---|---|
| Synonym | Sb03g008380 |
| Functional annotation | TOO MANY MOUTHS precursor, putative, expressed |
| UniProt | A0A1B6Q2E8 |
| Pfam | PF13855 |
| Panther DB | PTHR27000 PTHR27000:SF18 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0005515; protein binding |
Orthologs (automatic annotation)
| TAIR | AT1G68780 : RNI-like superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g02060.2 : TOO MANY MOUTHS precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a023776 |
| Brachypodium | KQK02345 |
| Barley | HORVU3Hr1G013160.6 , HORVU3Hr1G013160.7 , HORVU3Hr1G013160.4 , HORVU3Hr1G013160.5 , HORVU3Hr1G013160.2 , HORVU3Hr1G013160.3 , HORVU3Hr1G013160.1 , HORVU3Hr1G013160.8 , HORVU3Hr1G013160.9 |
| Wheat | TraesCS3A02G072600 , TraesCS3A02G072600 , TraesCS3D02G072400 , TraesCS3B02G086700 , TraesCS3B02G086700 , TraesCS3D02G072400 , TraesCS3D02G072300 , TraesCS3D02G072300 , TraesCS3A02G072700 , TraesCS3A02G072700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G135600 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 2 | Sobic.010G020600 | Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed | - |
| 3 | Sobic.001G075700 | AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed | K09285: OVM, AP2-like factor, ANT lineage |
| 4 | Sobic.004G302700 | YABBY domain containing protein, putative, expressed | - |
| 5 | Sobic.008G042200 | DUF623 domain containing protein, expressed | - |
| 6 | Sobic.009G141300 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 7 | Sobic.003G366000 | DUF623 domain containing protein, expressed | - |
| 8 | Sobic.001G381100 | receptor-like protein kinase precursor, putative, expressed | - |
| 9 | Sobic.006G110850 | - | - |
| 10 | Sobic.007G142900 | receptor-like kinase, putative, expressed | - |
| 11 | Sobic.006G058000 | OsSCP24 - Putative Serine Carboxypeptidase homologue, expressed | K16297: serine carboxypeptidase-like clade II |
| 12 | Sobic.007G163400 | protein Kinase-like protein TMKL1 precursor, putative, expressed | - |
| 13 | Sobic.002G206100 | aspartic proteinase, putative, expressed | - |
| 14 | Sobic.004G317200 | "Upregulated to a greater extent than that of SbER1 in stem in response to drouht stress, not expredded in roots. SbER2 fusion protein localized on the cell membrane and chloroplast. Net photosynthetic rate and WUE, phenylpropanoid biosynthetic genes expression, and lignin content increased in overexpressing maize."(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed | - |
| 15 | Sobic.007G189400 | BEE 1, putative, expressed | - |
| 16 | Sobic.005G204100 | kelch repeat protein, putative, expressed | - |
| 17 | Sobic.008G190000 | leucine-rich repeat family protein, putative, expressed | - |
| 18 | Sobic.001G042600 | expressed protein | - |
| 19 | Sobic.005G092700 | expressed protein | - |
| 20 | Sobic.003G018700 | CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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