Gene annotation
Transcriptome id Sobic.001G454800.1
Synonym QRT2, Sb01g042735
Functional annotation polygalacturonase, putative, expressed
UniProt A0A1B6QPL0
Pfam PF00295
Panther DB PTHR31375 PTHR31375:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004650polygalacturonase activity


Orthologs (automatic annotation)
TAIR AT3G07970 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os03g11760.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK22867 , PNT77860 , PNT77861
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G179000 LRP1, putative, expressed -
2 Sobic.003G418300 protein kinase, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
3 Sobic.003G009800 expressed protein -
4 Sobic.002G355900 LTPL64 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.001G159100 expressed protein -
6 Sobic.003G444400 expansin precursor, putative, expressed -
7 Sobic.002G144666 - -
8 Sobic.010G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock 22 kDa protein, mitochondrial precursor, putative, expressed K13993: HSP20 family protein
9 Sobic.010G053300 expressed protein -
10 Sobic.003G011700 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed K00606: 3-methyl-2-oxobutanoate hydroxymethyltransferase
11 Sobic.001G511600 expressed protein -
12 Sobic.004G227900 expansin precursor, putative, expressed -
13 Sobic.003G382400 MLO domain containing protein, putative, expressed K08472: mlo protein
14 Sobic.001G110100 expressed protein -
15 Sobic.008G004200 MYB family transcription factor, putative, expressed -
16 Sobic.001G102600 regulatory protein, putative, expressed -
17 Sobic.003G271700 - -
18 Sobic.001G472301 - -
19 Sobic.004G118100 harpin-induced protein 1 domain containing protein, expressed -
20 Sobic.010G189366 - K01674: carbonic anhydrase


Gene co-expression network
sample Sobic001G454800 Sobic001G454800 Sobic007G179000 Sobic007G179000 Sobic001G454800--Sobic007G179000 Sobic003G418300 Sobic003G418300 Sobic001G454800--Sobic003G418300 Sobic003G009800 Sobic003G009800 Sobic001G454800--Sobic003G009800 Sobic002G355900 Sobic002G355900 Sobic001G454800--Sobic002G355900 Sobic001G159100 Sobic001G159100 Sobic001G454800--Sobic001G159100 Sobic003G444400 Sobic003G444400 Sobic001G454800--Sobic003G444400 Sobic002G144666 Sobic002G144666 Sobic001G454800--Sobic002G144666 Sobic010G087800 Sobic010G087800 Sobic001G454800--Sobic010G087800 Sobic010G053300 Sobic010G053300 Sobic001G454800--Sobic010G053300 Sobic007G179000--Sobic002G355900 Sobic008G012600 Sobic008G012600 Sobic007G179000--Sobic008G012600 Sobic001G341700 Sobic001G341700 Sobic007G179000--Sobic001G341700 Sobic006G092300 Sobic006G092300 Sobic007G179000--Sobic006G092300 Sobic007G179000--Sobic001G159100 Sobic007G179000--Sobic003G009800 Sobic003G382400 Sobic003G382400 Sobic007G179000--Sobic003G382400 Sobic010G049600 Sobic010G049600 Sobic007G179000--Sobic010G049600 Sobic001G491400 Sobic001G491400 Sobic007G179000--Sobic001G491400 Sobic002G016400 Sobic002G016400 Sobic003G418300--Sobic002G016400 Sobic005G098400 Sobic005G098400 Sobic003G418300--Sobic005G098400 Sobic001G345200 Sobic001G345200 Sobic003G418300--Sobic001G345200 Sobic003G338200 Sobic003G338200 Sobic003G418300--Sobic003G338200 Sobic008G170400 Sobic008G170400 Sobic003G418300--Sobic008G170400 Sobic007G094200 Sobic007G094200 Sobic003G418300--Sobic007G094200 Sobic005G231400 Sobic005G231400 Sobic003G418300--Sobic005G231400 Sobic010G216600 Sobic010G216600 Sobic003G418300--Sobic010G216600 Sobic008G187400 Sobic008G187400 Sobic003G418300--Sobic008G187400 Sobic003G009800--Sobic002G355900 Sobic003G009800--Sobic001G159100 Sobic003G271700 Sobic003G271700 Sobic003G009800--Sobic003G271700 Sobic007G206000 Sobic007G206000 Sobic003G009800--Sobic007G206000 Sobic010G236000 Sobic010G236000 Sobic003G009800--Sobic010G236000 Sobic002G410600 Sobic002G410600 Sobic003G009800--Sobic002G410600 Sobic003G038700 Sobic003G038700 Sobic003G009800--Sobic003G038700 Sobic007G180700 Sobic007G180700 Sobic003G009800--Sobic007G180700 Sobic004G202800 Sobic004G202800 Sobic003G009800--Sobic004G202800 Sobic002G355900--Sobic003G009800 Sobic002G355900--Sobic001G159100 Sobic002G355900--Sobic007G180700 Sobic002G355900--Sobic003G444400 Sobic006G098300 Sobic006G098300 Sobic002G355900--Sobic006G098300 Sobic002G399600 Sobic002G399600 Sobic002G355900--Sobic002G399600 Sobic002G270400 Sobic002G270400 Sobic002G355900--Sobic002G270400 Sobic006G267400 Sobic006G267400 Sobic002G355900--Sobic006G267400 Sobic007G107500 Sobic007G107500 Sobic002G355900--Sobic007G107500 Sobic001G159100--Sobic002G355900 Sobic001G159100--Sobic003G009800 Sobic001G159100--Sobic006G267400 Sobic001G159100--Sobic007G180700 Sobic004G349150 Sobic004G349150 Sobic001G159100--Sobic004G349150 Sobic010G187400 Sobic010G187400 Sobic001G159100--Sobic010G187400 Sobic006G006900 Sobic006G006900 Sobic001G159100--Sobic006G006900 Sobic007G000600 Sobic007G000600 Sobic001G159100--Sobic007G000600 Sobic001G133200 Sobic001G133200 Sobic001G159100--Sobic001G133200 Sobic003G444400--Sobic002G355900 Sobic003G444400--Sobic003G009800 Sobic003G444400--Sobic001G159100 Sobic003G444400--Sobic007G180700 Sobic002G165500 Sobic002G165500 Sobic003G444400--Sobic002G165500 Sobic003G004900 Sobic003G004900 Sobic003G444400--Sobic003G004900 Sobic005G054800 Sobic005G054800 Sobic003G444400--Sobic005G054800 Sobic006G137000 Sobic006G137000 Sobic003G444400--Sobic006G137000 Sobic003G444400--Sobic006G267400 Sobic002G144666--Sobic001G341700 Sobic004G318800 Sobic004G318800 Sobic002G144666--Sobic004G318800 Sobic007G076100 Sobic007G076100 Sobic002G144666--Sobic007G076100 Sobic003G178500 Sobic003G178500 Sobic002G144666--Sobic003G178500 Sobic002G416400 Sobic002G416400 Sobic002G144666--Sobic002G416400 Sobic002G144666--Sobic007G094200 Sobic006G079500 Sobic006G079500 Sobic002G144666--Sobic006G079500 Sobic005G218000 Sobic005G218000 Sobic002G144666--Sobic005G218000 Sobic004G227900 Sobic004G227900 Sobic002G144666--Sobic004G227900 Sobic010G087800--Sobic003G009800 Sobic007G043300 Sobic007G043300 Sobic010G087800--Sobic007G043300 Sobic006G089700 Sobic006G089700 Sobic010G087800--Sobic006G089700 Sobic010G087800--Sobic003G271700 Sobic010G038400 Sobic010G038400 Sobic010G087800--Sobic010G038400 Sobic002G035000 Sobic002G035000 Sobic010G087800--Sobic002G035000 Sobic003G038800 Sobic003G038800 Sobic010G087800--Sobic003G038800 Sobic010G087800--Sobic002G355900 Sobic010G087800--Sobic007G206000 Sobic003G088200 Sobic003G088200 Sobic010G053300--Sobic003G088200 Sobic003G016000 Sobic003G016000 Sobic010G053300--Sobic003G016000 Sobic003G263800 Sobic003G263800 Sobic010G053300--Sobic003G263800 Sobic002G427550 Sobic002G427550 Sobic010G053300--Sobic002G427550 Sobic010G053300--Sobic001G133200
Octagon: transcription factors


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