Gene annotation
Transcriptome id Sobic.001G491300.1
Synonym Sb01g045950, SDG35, ATXR1
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt C5WWT2
Pfam PF00856
Panther DB PTHR12197 PTHR12197:SF126
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G26760 : SET domain protein 35
RAP-DB (Rice) LOC_Os03g07260.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a000839
Brachypodium KQK23443
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G339500 kinesin motor domain containing protein, putative, expressed -
2 Sobic.001G177900 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
3 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
4 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
5 Sobic.008G006800 inactive receptor kinase At2g26730 precursor, putative, expressed -
6 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
7 Sobic.004G198100 expressed protein -
8 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
9 Sobic.006G144300 expressed protein -
10 Sobic.005G005700 inactive receptor kinase At2g26730 precursor, putative, expressed -
11 Sobic.003G013000 inactive receptor kinase At2g26730 precursor, putative, expressed -
12 Sobic.001G029800 expressed protein -
13 Sobic.003G294500 dynamin family protein, putative, expressed -
14 Sobic.010G008900 kinesin motor domain containing protein, expressed K11498: centromeric protein E
15 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
16 Sobic.010G017400 DLT(Ortholog in rice:Tong et al. (2012))(PubMedID : 31659927)@DELLA protein SLR1, putative, expressed -
17 Sobic.002G313000 targeting protein-related, putative, expressed K16812: targeting protein for Xklp2
18 Sobic.001G116900 expressed protein -
19 Sobic.003G314900 flap endonuclease, putative, expressed K10746: exonuclease 1
20 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11


Gene co-expression network
sample Sobic001G491300 Sobic001G491300 Sobic004G339500 Sobic004G339500 Sobic001G491300--Sobic004G339500 Sobic001G177900 Sobic001G177900 Sobic001G491300--Sobic001G177900 Sobic003G260700 Sobic003G260700 Sobic001G491300--Sobic003G260700 Sobic007G168900 Sobic007G168900 Sobic001G491300--Sobic007G168900 Sobic008G006800 Sobic008G006800 Sobic001G491300--Sobic008G006800 Sobic004G257600 Sobic004G257600 Sobic001G491300--Sobic004G257600 Sobic004G198100 Sobic004G198100 Sobic001G491300--Sobic004G198100 Sobic004G271300 Sobic004G271300 Sobic001G491300--Sobic004G271300 Sobic006G144300 Sobic006G144300 Sobic001G491300--Sobic006G144300 Sobic004G339500--Sobic003G260700 Sobic004G339500--Sobic008G006800 Sobic001G170800 Sobic001G170800 Sobic004G339500--Sobic001G170800 Sobic004G339500--Sobic001G177900 Sobic010G119300 Sobic010G119300 Sobic004G339500--Sobic010G119300 Sobic003G102000 Sobic003G102000 Sobic004G339500--Sobic003G102000 Sobic004G339500--Sobic004G198100 Sobic008G125700 Sobic008G125700 Sobic004G339500--Sobic008G125700 Sobic005G005700 Sobic005G005700 Sobic004G339500--Sobic005G005700 Sobic001G177900--Sobic007G168900 Sobic003G314900 Sobic003G314900 Sobic001G177900--Sobic003G314900 Sobic005G000500 Sobic005G000500 Sobic001G177900--Sobic005G000500 Sobic001G177900--Sobic003G260700 Sobic001G177900--Sobic001G170800 Sobic010G008900 Sobic010G008900 Sobic001G177900--Sobic010G008900 Sobic001G177900--Sobic004G339500 Sobic005G144600 Sobic005G144600 Sobic001G177900--Sobic005G144600 Sobic003G294500 Sobic003G294500 Sobic001G177900--Sobic003G294500 Sobic003G260700--Sobic001G170800 Sobic003G260700--Sobic004G257600 Sobic003G260700--Sobic004G339500 Sobic001G398400 Sobic001G398400 Sobic003G260700--Sobic001G398400 Sobic003G260700--Sobic004G198100 Sobic003G260700--Sobic004G271300 Sobic003G260700--Sobic008G006800 Sobic003G260700--Sobic001G177900 Sobic002G313000 Sobic002G313000 Sobic003G260700--Sobic002G313000 Sobic007G168900--Sobic005G000500 Sobic007G168900--Sobic005G144600 Sobic007G168900--Sobic004G271300 Sobic007G168900--Sobic001G177900 Sobic007G168900--Sobic003G314900 Sobic007G168900--Sobic003G294500 Sobic007G168900--Sobic003G260700 Sobic007G168900--Sobic010G008900 Sobic010G147700 Sobic010G147700 Sobic007G168900--Sobic010G147700 Sobic008G006800--Sobic005G005700 Sobic008G006800--Sobic010G119300 Sobic008G006800--Sobic003G260700 Sobic008G006800--Sobic001G398400 Sobic008G006800--Sobic004G339500 Sobic010G017400 Sobic010G017400 Sobic008G006800--Sobic010G017400 Sobic008G006800--Sobic004G271300 Sobic008G006800--Sobic002G313000 Sobic002G296000 Sobic002G296000 Sobic008G006800--Sobic002G296000 Sobic004G257600--Sobic003G260700 Sobic003G387700 Sobic003G387700 Sobic004G257600--Sobic003G387700 Sobic004G257600--Sobic001G398400 Sobic004G257600--Sobic001G177900 Sobic004G257600--Sobic004G198100 Sobic004G257600--Sobic001G170800 Sobic003G444100 Sobic003G444100 Sobic004G257600--Sobic003G444100 Sobic004G257600--Sobic007G168900 Sobic004G257600--Sobic004G339500 Sobic004G198100--Sobic003G260700 Sobic004G198100--Sobic010G119300 Sobic004G198100--Sobic001G398400 Sobic004G198100--Sobic008G125700 Sobic004G198100--Sobic004G257600 Sobic004G198100--Sobic001G170800 Sobic004G198100--Sobic004G339500 Sobic004G198100--Sobic002G313000 Sobic004G198100--Sobic004G271300 Sobic004G271300--Sobic007G168900 Sobic004G271300--Sobic005G000500 Sobic004G271300--Sobic003G260700 Sobic004G271300--Sobic001G170800 Sobic004G271300--Sobic005G005700 Sobic004G271300--Sobic001G398400 Sobic004G271300--Sobic008G006800 Sobic004G271300--Sobic001G177900 Sobic004G271300--Sobic005G144600 Sobic006G144300--Sobic003G294500 Sobic006G144300--Sobic005G144600 Sobic006G144300--Sobic007G168900 Sobic006G144300--Sobic001G177900 Sobic006G144300--Sobic003G314900 Sobic006G144300--Sobic003G260700 Sobic006G144300--Sobic004G257600 Sobic006G144300--Sobic005G000500 Sobic006G144300--Sobic004G271300
Octagon: transcription factors


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