Gene annotation
Transcriptome id Sobic.002G006500.4,Sobic.002G006500.3
Synonym Sb02g000770
Functional annotation MATE efflux family protein, putative, expressed
UniProt A0A1W0W1N9 , A0A1W0W1S6
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF169
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G23560 : MATE efflux family protein
RAP-DB (Rice) LOC_Os07g01750.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a056940 , Zm00025a044869 , Zm00025a028321 , Zm00025a032936
Brachypodium KQK16109 , KQK16110 , KQK21181
Barley HORVU2Hr1G063690.3 , HORVU2Hr1G063690.1 , HORVU2Hr1G063690.6 , HORVU2Hr1G063690.7 , HORVU2Hr1G063690.4 , HORVU2Hr1G063690.5 , HORVU2Hr1G063690.9 , HORVU2Hr1G063690.13
Wheat TraesCS2B02G280500 , TraesCS2D02G262300 , TraesCS2A02G261700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G171700 miro, putative, expressed K07953: GTP-binding protein SAR1
2 Sobic.005G201400 OsFBX222 - F-box domain containing protein, expressed -
3 Sobic.003G090400 seven in absentia protein family protein, expressed -
4 Sobic.009G240500 lipase class 3 family protein, putative, expressed -
5 Sobic.010G051800 helix-loop-helix DNA-binding domain containing protein, expressed -
6 Sobic.001G242200 MBTB35 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
7 Sobic.003G001901 - -
8 Sobic.010G261800 OsMADS16 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
9 Sobic.002G121100 OsSCP56 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
10 Sobic.008G041300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
11 Sobic.001G272400 - -
12 Sobic.006G254400 expressed protein -
13 Sobic.005G006900 RNA recognition motif containing protein, putative, expressed -
14 Sobic.003G354850 - -
15 Sobic.005G212300 MBTB24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
16 Sobic.002G100300 OsFBD15 - F-box and FBD domain containing protein, expressed -
17 Sobic.003G090200 seven in absentia protein family domain containing protein, expressed -
18 Sobic.005G173700 - -
19 Sobic.006G256400 expressed protein -
20 Sobic.002G298500 LTPL63 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -


Gene co-expression network
sample Sobic002G006500 Sobic002G006500 Sobic007G171700 Sobic007G171700 Sobic002G006500--Sobic007G171700 Sobic005G201400 Sobic005G201400 Sobic002G006500--Sobic005G201400 Sobic003G090400 Sobic003G090400 Sobic002G006500--Sobic003G090400 Sobic009G240500 Sobic009G240500 Sobic002G006500--Sobic009G240500 Sobic010G051800 Sobic010G051800 Sobic002G006500--Sobic010G051800 Sobic001G242200 Sobic001G242200 Sobic002G006500--Sobic001G242200 Sobic003G001901 Sobic003G001901 Sobic002G006500--Sobic003G001901 Sobic010G261800 Sobic010G261800 Sobic002G006500--Sobic010G261800 Sobic002G121100 Sobic002G121100 Sobic002G006500--Sobic002G121100 Sobic007G171700--Sobic003G001901 Sobic010G049700 Sobic010G049700 Sobic007G171700--Sobic010G049700 Sobic005G173700 Sobic005G173700 Sobic007G171700--Sobic005G173700 Sobic003G218000 Sobic003G218000 Sobic007G171700--Sobic003G218000 Sobic006G254400 Sobic006G254400 Sobic007G171700--Sobic006G254400 Sobic002G080450 Sobic002G080450 Sobic007G171700--Sobic002G080450 Sobic005G144500 Sobic005G144500 Sobic007G171700--Sobic005G144500 Sobic002G099700 Sobic002G099700 Sobic007G171700--Sobic002G099700 Sobic010G143633 Sobic010G143633 Sobic007G171700--Sobic010G143633 Sobic006G256400 Sobic006G256400 Sobic005G201400--Sobic006G256400 Sobic005G006900 Sobic005G006900 Sobic005G201400--Sobic005G006900 Sobic005G201400--Sobic009G240500 Sobic005G201400--Sobic003G090400 Sobic001G241700 Sobic001G241700 Sobic005G201400--Sobic001G241700 Sobic008G071700 Sobic008G071700 Sobic005G201400--Sobic008G071700 Sobic004G254700 Sobic004G254700 Sobic005G201400--Sobic004G254700 Sobic006G276600 Sobic006G276600 Sobic005G201400--Sobic006G276600 Sobic005G041500 Sobic005G041500 Sobic005G201400--Sobic005G041500 Sobic003G090400--Sobic009G240500 Sobic003G090400--Sobic005G006900 Sobic003G090200 Sobic003G090200 Sobic003G090400--Sobic003G090200 Sobic002G100300 Sobic002G100300 Sobic003G090400--Sobic002G100300 Sobic005G212300 Sobic005G212300 Sobic003G090400--Sobic005G212300 Sobic003G354850 Sobic003G354850 Sobic003G090400--Sobic003G354850 Sobic003G090400--Sobic005G201400 Sobic002G123400 Sobic002G123400 Sobic003G090400--Sobic002G123400 Sobic006G018000 Sobic006G018000 Sobic003G090400--Sobic006G018000 Sobic009G240500--Sobic001G242200 Sobic009G149100 Sobic009G149100 Sobic009G240500--Sobic009G149100 Sobic009G240500--Sobic005G006900 Sobic009G240500--Sobic008G071700 Sobic009G240500--Sobic004G254700 Sobic009G240500--Sobic006G276600 Sobic002G019300 Sobic002G019300 Sobic009G240500--Sobic002G019300 Sobic009G240500--Sobic005G041500 Sobic004G002700 Sobic004G002700 Sobic009G240500--Sobic004G002700 Sobic008G041300 Sobic008G041300 Sobic010G051800--Sobic008G041300 Sobic002G016000 Sobic002G016000 Sobic010G051800--Sobic002G016000 Sobic002G274700 Sobic002G274700 Sobic010G051800--Sobic002G274700 Sobic010G051800--Sobic010G143633 Sobic008G105600 Sobic008G105600 Sobic010G051800--Sobic008G105600 Sobic003G255700 Sobic003G255700 Sobic010G051800--Sobic003G255700 Sobic001G075201 Sobic001G075201 Sobic010G051800--Sobic001G075201 Sobic004G027200 Sobic004G027200 Sobic010G051800--Sobic004G027200 Sobic010G051800--Sobic007G171700 Sobic001G242200--Sobic009G240500 Sobic002G013550 Sobic002G013550 Sobic001G242200--Sobic002G013550 Sobic001G242200--Sobic008G071700 Sobic001G242200--Sobic005G006900 Sobic001G242200--Sobic003G090200 Sobic001G242200--Sobic002G100300 Sobic001G242200--Sobic005G212300 Sobic001G242200--Sobic003G354850 Sobic001G242200--Sobic009G149100 Sobic003G001901--Sobic007G171700 Sobic003G001901--Sobic005G173700 Sobic007G144100 Sobic007G144100 Sobic003G001901--Sobic007G144100 Sobic003G001901--Sobic002G080450 Sobic003G001901--Sobic003G218000 Sobic003G001901--Sobic006G254400 Sobic002G123300 Sobic002G123300 Sobic003G001901--Sobic002G123300 Sobic001G034200 Sobic001G034200 Sobic003G001901--Sobic001G034200 Sobic003G001901--Sobic008G041300 Sobic010G090000 Sobic010G090000 Sobic010G261800--Sobic010G090000 Sobic010G261800--Sobic006G256400 Sobic010G261800--Sobic002G123400 Sobic010G261800--Sobic005G006900 Sobic010G261800--Sobic003G090200 Sobic010G261800--Sobic002G100300 Sobic010G261800--Sobic005G212300 Sobic010G261800--Sobic003G354850 Sobic010G261800--Sobic002G121100 Sobic007G219300 Sobic007G219300 Sobic002G121100--Sobic007G219300 Sobic003G180700 Sobic003G180700 Sobic002G121100--Sobic003G180700 Sobic001G355300 Sobic001G355300 Sobic002G121100--Sobic001G355300 Sobic009G067100 Sobic009G067100 Sobic002G121100--Sobic009G067100 Sobic007G083500 Sobic007G083500 Sobic002G121100--Sobic007G083500 Sobic001G092650 Sobic001G092650 Sobic002G121100--Sobic001G092650 Sobic002G298500 Sobic002G298500 Sobic002G121100--Sobic002G298500 Sobic010G043300 Sobic010G043300 Sobic002G121100--Sobic010G043300 Sobic002G121100--Sobic010G261800
Octagon: transcription factors


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