Gene annotation
Transcriptome id Sobic.002G124400.1
Synonym EXPB4, ATEXPB4, ATHEXPBETA1.1, Sb02g010720
Functional annotation expansin precursor, putative, expressed
UniProt C5X541
Pfam PF03330 PF01357
Panther DB PTHR31692 PTHR31692:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G45110 : expansin B4
RAP-DB (Rice) LOC_Os02g44108.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a045834 , Zm00025a020872 , Zm00025a020873
Brachypodium KQK00631
Barley HORVU0Hr1G018320.2 , HORVU0Hr1G018320.3 , HORVU0Hr1G018320.1 , HORVU0Hr1G018320.7 , HORVU0Hr1G018320.4 , HORVU0Hr1G018320.5 , HORVU0Hr1G018320.8 , HORVU6Hr1G063180.1 , HORVU0Hr1G018320.6 , HORVU0Hr1G016410.1
Wheat TraesCS6A02G249200 , TraesCS6D02G231300 , TraesCS6D02G231200 , TraesCS6B02G275800 , TraesCS6A02G249300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G124400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G061400 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed -
2 Sobic.005G231300 thaumatin, putative, expressed -
3 Sobic.004G249700 plastocyanin-like domain containing protein, putative, expressed -
4 Sobic.008G077300 expressed protein -
5 Sobic.007G208100 heavy metal-associated domain containing protein, expressed -
6 Sobic.010G095100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
7 Sobic.001G514300 Glutathione S-transferase("PubMedID : 26759170,PubMedID : 24597475")@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.003G296500 leucine rich repeat family protein, putative, expressed -
9 Sobic.007G091900 ATP binding protein, putative, expressed -
10 Sobic.001G189500 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -
11 Sobic.001G402400 expressed protein -
12 Sobic.002G275500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.010G220300 glucan endo-1,3-beta-glucosidase 12 precursor, putative, expressed -
14 Sobic.005G110600 glycosyl hydrolase, putative, expressed K01183: chitinase
15 Sobic.004G297950 - -
16 Sobic.009G079900 endoglucanase precursor, putative, expressed -
17 Sobic.003G052100 receptor-like protein kinase 2 precursor, putative, expressed -
18 Sobic.001G163800 No apical meristem protein, putative, expressed -
19 Sobic.002G034301 - -
20 Sobic.008G099100 expressed protein -


Gene co-expression network
sample Sobic002G124400 Sobic002G124400 Sobic009G061400 Sobic009G061400 Sobic002G124400--Sobic009G061400 Sobic005G231300 Sobic005G231300 Sobic002G124400--Sobic005G231300 Sobic004G249700 Sobic004G249700 Sobic002G124400--Sobic004G249700 Sobic008G077300 Sobic008G077300 Sobic002G124400--Sobic008G077300 Sobic007G208100 Sobic007G208100 Sobic002G124400--Sobic007G208100 Sobic010G095100 Sobic010G095100 Sobic002G124400--Sobic010G095100 Sobic001G514300 Sobic001G514300 Sobic002G124400--Sobic001G514300 Sobic003G296500 Sobic003G296500 Sobic002G124400--Sobic003G296500 Sobic007G091900 Sobic007G091900 Sobic002G124400--Sobic007G091900 Sobic002G016400 Sobic002G016400 Sobic009G061400--Sobic002G016400 Sobic001G409700 Sobic001G409700 Sobic009G061400--Sobic001G409700 Sobic004G156900 Sobic004G156900 Sobic009G061400--Sobic004G156900 Sobic006G054600 Sobic006G054600 Sobic009G061400--Sobic006G054600 Sobic009G061400--Sobic005G231300 Sobic009G061400--Sobic008G077300 Sobic007G111700 Sobic007G111700 Sobic009G061400--Sobic007G111700 Sobic009G061400--Sobic007G208100 Sobic001G264400 Sobic001G264400 Sobic009G061400--Sobic001G264400 Sobic005G231300--Sobic001G514300 Sobic003G083600 Sobic003G083600 Sobic005G231300--Sobic003G083600 Sobic009G079900 Sobic009G079900 Sobic005G231300--Sobic009G079900 Sobic008G099100 Sobic008G099100 Sobic005G231300--Sobic008G099100 Sobic005G231300--Sobic007G208100 Sobic006G030200 Sobic006G030200 Sobic005G231300--Sobic006G030200 Sobic001G314000 Sobic001G314000 Sobic005G231300--Sobic001G314000 Sobic005G231300--Sobic008G077300 Sobic003G151900 Sobic003G151900 Sobic005G231300--Sobic003G151900 Sobic001G239400 Sobic001G239400 Sobic004G249700--Sobic001G239400 Sobic001G005000 Sobic001G005000 Sobic004G249700--Sobic001G005000 Sobic010G194500 Sobic010G194500 Sobic004G249700--Sobic010G194500 Sobic009G008300 Sobic009G008300 Sobic004G249700--Sobic009G008300 Sobic007G133600 Sobic007G133600 Sobic004G249700--Sobic007G133600 Sobic009G076800 Sobic009G076800 Sobic004G249700--Sobic009G076800 Sobic006G166700 Sobic006G166700 Sobic004G249700--Sobic006G166700 Sobic004G107900 Sobic004G107900 Sobic004G249700--Sobic004G107900 Sobic006G018900 Sobic006G018900 Sobic004G249700--Sobic006G018900 Sobic008G077300--Sobic001G264400 Sobic008G077300--Sobic005G231300 Sobic008G077300--Sobic001G514300 Sobic005G121700 Sobic005G121700 Sobic008G077300--Sobic005G121700 Sobic008G077300--Sobic006G030200 Sobic008G077300--Sobic007G208100 Sobic008G077300--Sobic002G016400 Sobic004G297950 Sobic004G297950 Sobic008G077300--Sobic004G297950 Sobic008G077300--Sobic004G156900 Sobic007G208100--Sobic005G231300 Sobic007G208100--Sobic002G016400 Sobic007G208100--Sobic003G296500 Sobic006G149300 Sobic006G149300 Sobic007G208100--Sobic006G149300 Sobic002G034301 Sobic002G034301 Sobic007G208100--Sobic002G034301 Sobic003G420100 Sobic003G420100 Sobic007G208100--Sobic003G420100 Sobic010G104400 Sobic010G104400 Sobic007G208100--Sobic010G104400 Sobic003G247600 Sobic003G247600 Sobic007G208100--Sobic003G247600 Sobic007G208100--Sobic001G514300 Sobic009G021700 Sobic009G021700 Sobic010G095100--Sobic009G021700 Sobic010G095100--Sobic002G034301 Sobic010G095100--Sobic005G121700 Sobic004G054000 Sobic004G054000 Sobic010G095100--Sobic004G054000 Sobic003G052900 Sobic003G052900 Sobic010G095100--Sobic003G052900 Sobic008G143000 Sobic008G143000 Sobic010G095100--Sobic008G143000 Sobic010G095100--Sobic003G420100 Sobic010G095100--Sobic007G208100 Sobic010G095100--Sobic002G124400 Sobic001G514300--Sobic005G231300 Sobic001G514300--Sobic008G099100 Sobic001G514300--Sobic003G083600 Sobic001G514300--Sobic001G314000 Sobic001G514300--Sobic009G079900 Sobic001G514300--Sobic008G077300 Sobic008G135300 Sobic008G135300 Sobic001G514300--Sobic008G135300 Sobic001G514300--Sobic003G151900 Sobic003G269100 Sobic003G269100 Sobic001G514300--Sobic003G269100 Sobic001G402400 Sobic001G402400 Sobic003G296500--Sobic001G402400 Sobic003G296500--Sobic007G208100 Sobic003G296500--Sobic010G104400 Sobic003G296500--Sobic005G231300 Sobic003G052100 Sobic003G052100 Sobic003G296500--Sobic003G052100 Sobic001G301900 Sobic001G301900 Sobic003G296500--Sobic001G301900 Sobic010G220300 Sobic010G220300 Sobic003G296500--Sobic010G220300 Sobic001G029800 Sobic001G029800 Sobic003G296500--Sobic001G029800 Sobic004G271500 Sobic004G271500 Sobic003G296500--Sobic004G271500 Sobic001G302300 Sobic001G302300 Sobic007G091900--Sobic001G302300 Sobic003G270400 Sobic003G270400 Sobic007G091900--Sobic003G270400 Sobic007G119500 Sobic007G119500 Sobic007G091900--Sobic007G119500 Sobic003G366300 Sobic003G366300 Sobic007G091900--Sobic003G366300 Sobic001G406700 Sobic001G406700 Sobic007G091900--Sobic001G406700 Sobic004G047600 Sobic004G047600 Sobic007G091900--Sobic004G047600 Sobic003G387500 Sobic003G387500 Sobic007G091900--Sobic003G387500 Sobic004G319600 Sobic004G319600 Sobic007G091900--Sobic004G319600 Sobic003G378800 Sobic003G378800 Sobic007G091900--Sobic003G378800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.