Gene annotation
Transcriptome id Sobic.002G431700.1
Synonym ATPCNA1, PCNA1, Sb02g044100
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PCNA - Putative DNA replicative polymerase clamp, expressed
UniProt C5X6I1
Pfam PF02747 PF00705
Panther DB PTHR11352 PTHR11352:SF4
NCBI CDD KOG1636; DNA polymerase delta processivity factor (proliferating cell nuclear antigen)
KEGG Orthology K04802; proliferating cell nuclear antigen
Gene Ontology GO:0006275; regulation of DNA replication GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G07370 : proliferating cellular nuclear antigen 1
RAP-DB (Rice) LOC_Os02g56130.1 : PCNA - Putative DNA replicative polymerase clamp, expressed
MaizeGDB (Corn) -
Brachypodium KQJ92713 , PNT65345 , PNT65341 , PNT65342 , PNT65643
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G145600 Os4bglu16 - monolignol beta-glucoside homologue, expressed K05350: beta-glucosidase
2 Sobic.001G050300 LTPL83 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
3 Sobic.010G200900 GDSL-like lipase/acylhydrolase, putative, expressed -
4 Sobic.003G326700 glycosyl hydrolases family 17, putative, expressed -
5 Sobic.004G089400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed -
6 Sobic.001G266200 POEI14 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
7 Sobic.005G006701 - -
8 Sobic.005G125400 C4-dicarboxylate transporter/malic acid transport protein, expressed -
9 Sobic.001G510200 estradiol 17-beta-dehydrogenase 12, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
10 Sobic.010G043300 expressed protein -
11 Sobic.001G092700 - -
12 Sobic.008G057500 Aldehyde dehydrogenase 3 H1(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
13 Sobic.004G149200 ankyrin, putative, expressed -
14 Sobic.001G215201 - -
15 Sobic.007G010350 - -
16 Sobic.009G162800 laccase precursor protein, putative, expressed K05909: laccase
17 Sobic.003G062900 OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
18 Sobic.002G260100 - -
19 Sobic.001G092650 - -
20 Sobic.001G355300 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase


Gene co-expression network
sample Sobic002G431700 Sobic002G431700 Sobic006G145600 Sobic006G145600 Sobic002G431700--Sobic006G145600 Sobic001G050300 Sobic001G050300 Sobic002G431700--Sobic001G050300 Sobic010G200900 Sobic010G200900 Sobic002G431700--Sobic010G200900 Sobic003G326700 Sobic003G326700 Sobic002G431700--Sobic003G326700 Sobic004G089400 Sobic004G089400 Sobic002G431700--Sobic004G089400 Sobic001G266200 Sobic001G266200 Sobic002G431700--Sobic001G266200 Sobic005G006701 Sobic005G006701 Sobic002G431700--Sobic005G006701 Sobic005G125400 Sobic005G125400 Sobic002G431700--Sobic005G125400 Sobic001G510200 Sobic001G510200 Sobic002G431700--Sobic001G510200 Sobic006G145600--Sobic005G006701 Sobic010G043300 Sobic010G043300 Sobic006G145600--Sobic010G043300 Sobic006G145600--Sobic004G089400 Sobic007G010350 Sobic007G010350 Sobic006G145600--Sobic007G010350 Sobic001G092700 Sobic001G092700 Sobic006G145600--Sobic001G092700 Sobic007G219300 Sobic007G219300 Sobic006G145600--Sobic007G219300 Sobic001G355300 Sobic001G355300 Sobic006G145600--Sobic001G355300 Sobic006G145600--Sobic005G125400 Sobic003G164300 Sobic003G164300 Sobic006G145600--Sobic003G164300 Sobic001G050300--Sobic010G200900 Sobic001G050300--Sobic001G510200 Sobic002G394700 Sobic002G394700 Sobic001G050300--Sobic002G394700 Sobic001G050300--Sobic002G431700 Sobic005G088500 Sobic005G088500 Sobic001G050300--Sobic005G088500 Sobic001G050300--Sobic001G266200 Sobic001G050300--Sobic006G145600 Sobic009G162800 Sobic009G162800 Sobic001G050300--Sobic009G162800 Sobic006G166800 Sobic006G166800 Sobic001G050300--Sobic006G166800 Sobic003G062900 Sobic003G062900 Sobic010G200900--Sobic003G062900 Sobic003G070200 Sobic003G070200 Sobic010G200900--Sobic003G070200 Sobic001G153800 Sobic001G153800 Sobic010G200900--Sobic001G153800 Sobic001G359100 Sobic001G359100 Sobic010G200900--Sobic001G359100 Sobic006G059400 Sobic006G059400 Sobic010G200900--Sobic006G059400 Sobic002G334400 Sobic002G334400 Sobic010G200900--Sobic002G334400 Sobic002G305400 Sobic002G305400 Sobic010G200900--Sobic002G305400 Sobic009G087900 Sobic009G087900 Sobic010G200900--Sobic009G087900 Sobic002G260100 Sobic002G260100 Sobic010G200900--Sobic002G260100 Sobic003G326700--Sobic006G145600 Sobic001G221200 Sobic001G221200 Sobic003G326700--Sobic001G221200 Sobic001G285600 Sobic001G285600 Sobic003G326700--Sobic001G285600 Sobic002G226800 Sobic002G226800 Sobic003G326700--Sobic002G226800 Sobic004G081900 Sobic004G081900 Sobic003G326700--Sobic004G081900 Sobic003G326700--Sobic002G431700 Sobic008G030600 Sobic008G030600 Sobic003G326700--Sobic008G030600 Sobic006G086800 Sobic006G086800 Sobic003G326700--Sobic006G086800 Sobic008G130800 Sobic008G130800 Sobic003G326700--Sobic008G130800 Sobic004G089400--Sobic005G006701 Sobic004G149200 Sobic004G149200 Sobic004G089400--Sobic004G149200 Sobic004G089400--Sobic003G062900 Sobic004G089400--Sobic010G043300 Sobic004G089400--Sobic002G260100 Sobic004G089400--Sobic006G059400 Sobic006G067300 Sobic006G067300 Sobic004G089400--Sobic006G067300 Sobic004G089400--Sobic003G070200 Sobic004G089400--Sobic001G359100 Sobic001G266200--Sobic001G510200 Sobic010G231600 Sobic010G231600 Sobic001G266200--Sobic010G231600 Sobic001G266200--Sobic006G166800 Sobic007G027200 Sobic007G027200 Sobic001G266200--Sobic007G027200 Sobic001G538000 Sobic001G538000 Sobic001G266200--Sobic001G538000 Sobic001G266200--Sobic009G162800 Sobic001G266200--Sobic010G200900 Sobic002G039400 Sobic002G039400 Sobic001G266200--Sobic002G039400 Sobic010G124600 Sobic010G124600 Sobic001G266200--Sobic010G124600 Sobic005G006701--Sobic004G089400 Sobic005G006701--Sobic010G043300 Sobic005G006701--Sobic004G149200 Sobic005G006701--Sobic007G010350 Sobic005G006701--Sobic006G067300 Sobic005G006701--Sobic002G260100 Sobic005G006701--Sobic001G092700 Sobic005G006701--Sobic003G062900 Sobic005G006701--Sobic003G164300 Sobic005G125400--Sobic001G355300 Sobic005G125400--Sobic007G219300 Sobic003G180700 Sobic003G180700 Sobic005G125400--Sobic003G180700 Sobic002G298500 Sobic002G298500 Sobic005G125400--Sobic002G298500 Sobic009G067100 Sobic009G067100 Sobic005G125400--Sobic009G067100 Sobic007G083500 Sobic007G083500 Sobic005G125400--Sobic007G083500 Sobic006G018000 Sobic006G018000 Sobic005G125400--Sobic006G018000 Sobic001G092650 Sobic001G092650 Sobic005G125400--Sobic001G092650 Sobic005G125400--Sobic003G164300 Sobic001G510200--Sobic007G027200 Sobic001G510200--Sobic006G166800 Sobic001G510200--Sobic002G394700 Sobic001G221400 Sobic001G221400 Sobic001G510200--Sobic001G221400 Sobic004G167000 Sobic004G167000 Sobic001G510200--Sobic004G167000 Sobic001G510200--Sobic002G039400 Sobic006G125600 Sobic006G125600 Sobic001G510200--Sobic006G125600 Sobic010G108200 Sobic010G108200 Sobic001G510200--Sobic010G108200 Sobic008G008200 Sobic008G008200 Sobic001G510200--Sobic008G008200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.