Gene annotation
Transcriptome id Sobic.003G005400.1
Synonym Sb03g000660, PMEPCRF, ATPMEPCRF
Functional annotation pectinesterase, putative, expressed
UniProt C5XJK9
Pfam PF04043 PF01095
Panther DB PTHR31707 PTHR31707:SF56
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0004857; enzyme inhibitor activity GO:0005618cell wall


Orthologs (automatic annotation)
TAIR AT5G53370 : pectin methylesterase PCR fragment F
RAP-DB (Rice) LOC_Os01g13320.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU2Hr1G018710.4 , HORVU2Hr1G018710.1 , HORVU2Hr1G018710.3
Wheat TraesCS2A02G109600 , TraesCS2D02G109800 , TraesCS2B02G127600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G090800 no apical meristem protein, expressed -
2 Sobic.006G278950 - -
3 Sobic.003G429101 - -
4 Sobic.006G084100 expressed protein -
5 Sobic.003G242600 - -
6 Sobic.001G211000 RIPER3 - Ripening-related family protein precursor, putative, expressed -
7 Sobic.003G046900 expressed protein -
8 Sobic.001G388100 Up-reguralion under drought(PubMedID : 24916767)@Late embryogenesis abundant protein 1("PubMedID : 26759170,PubMedID : 24597475")@late embryogenesis abundant protein 1, putative, expressed -
9 Sobic.009G150800 indole-3-acetate beta-glucosyltransferase, putative, expressed -
10 Sobic.009G214700 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@bHelix-loop-helix transcription factor, putative, expressed -
11 Sobic.006G149650 - -
12 Sobic.010G212900 expressed protein -
13 Sobic.003G422100 "beta-1,3-glucanase "(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
14 Sobic.002G364301 - -
15 Sobic.006G261000 cytochrome P450, putative, expressed -
16 Sobic.004G196000 late embryogenesis abundant protein D-34, putative, expressed -
17 Sobic.003G241400 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@seed maturation protein PM41, putative, expressed -
18 Sobic.002G348200 expressed protein -
19 Sobic.008G096500 plant protein of unknown function domain containing protein, expressed -
20 Sobic.007G075200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional purine biosynthesis protein purH, putative, expressed K00602: phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase


Gene co-expression network
sample Sobic003G005400 Sobic003G005400 Sobic010G090800 Sobic010G090800 Sobic003G005400--Sobic010G090800 Sobic006G278950 Sobic006G278950 Sobic003G005400--Sobic006G278950 Sobic003G429101 Sobic003G429101 Sobic003G005400--Sobic003G429101 Sobic006G084100 Sobic006G084100 Sobic003G005400--Sobic006G084100 Sobic003G242600 Sobic003G242600 Sobic003G005400--Sobic003G242600 Sobic001G211000 Sobic001G211000 Sobic003G005400--Sobic001G211000 Sobic003G046900 Sobic003G046900 Sobic003G005400--Sobic003G046900 Sobic001G388100 Sobic001G388100 Sobic003G005400--Sobic001G388100 Sobic009G150800 Sobic009G150800 Sobic003G005400--Sobic009G150800 Sobic010G090800--Sobic006G278950 Sobic010G090800--Sobic003G242600 Sobic010G090800--Sobic003G005400 Sobic010G090800--Sobic006G084100 Sobic010G090800--Sobic001G211000 Sobic010G090800--Sobic003G429101 Sobic010G090800--Sobic009G150800 Sobic010G090800--Sobic001G388100 Sobic010G090800--Sobic003G046900 Sobic006G278950--Sobic006G084100 Sobic006G278950--Sobic001G211000 Sobic006G278950--Sobic003G242600 Sobic006G278950--Sobic010G090800 Sobic006G278950--Sobic003G005400 Sobic006G278950--Sobic001G388100 Sobic006G278950--Sobic003G429101 Sobic006G278950--Sobic003G046900 Sobic008G096500 Sobic008G096500 Sobic006G278950--Sobic008G096500 Sobic003G429101--Sobic003G046900 Sobic010G212900 Sobic010G212900 Sobic003G429101--Sobic010G212900 Sobic001G220066 Sobic001G220066 Sobic003G429101--Sobic001G220066 Sobic002G348200 Sobic002G348200 Sobic003G429101--Sobic002G348200 Sobic002G157350 Sobic002G157350 Sobic003G429101--Sobic002G157350 Sobic004G196000 Sobic004G196000 Sobic003G429101--Sobic004G196000 Sobic009G214700 Sobic009G214700 Sobic003G429101--Sobic009G214700 Sobic006G149650 Sobic006G149650 Sobic003G429101--Sobic006G149650 Sobic008G192200 Sobic008G192200 Sobic003G429101--Sobic008G192200 Sobic006G084100--Sobic001G388100 Sobic006G084100--Sobic006G278950 Sobic006G084100--Sobic001G211000 Sobic001G495850 Sobic001G495850 Sobic006G084100--Sobic001G495850 Sobic006G084100--Sobic003G242600 Sobic006G084100--Sobic010G090800 Sobic001G311200 Sobic001G311200 Sobic006G084100--Sobic001G311200 Sobic006G084100--Sobic009G150800 Sobic007G004900 Sobic007G004900 Sobic006G084100--Sobic007G004900 Sobic003G422100 Sobic003G422100 Sobic003G242600--Sobic003G422100 Sobic003G242600--Sobic006G278950 Sobic003G242600--Sobic003G429101 Sobic003G242600--Sobic006G084100 Sobic003G242600--Sobic003G046900 Sobic003G242600--Sobic010G090800 Sobic003G242600--Sobic010G212900 Sobic003G242600--Sobic001G211000 Sobic003G242600--Sobic001G388100 Sobic001G211000--Sobic006G084100 Sobic001G211000--Sobic006G278950 Sobic001G211000--Sobic003G242600 Sobic001G211000--Sobic010G090800 Sobic001G211000--Sobic001G388100 Sobic001G211000--Sobic003G005400 Sobic001G211000--Sobic003G429101 Sobic001G211000--Sobic003G046900 Sobic001G211000--Sobic001G311200 Sobic003G046900--Sobic004G196000 Sobic003G046900--Sobic008G192200 Sobic001G272300 Sobic001G272300 Sobic003G046900--Sobic001G272300 Sobic001G388100--Sobic001G495850 Sobic001G388100--Sobic009G150800 Sobic003G241400 Sobic003G241400 Sobic001G388100--Sobic003G241400 Sobic001G388100--Sobic006G084100 Sobic006G261000 Sobic006G261000 Sobic001G388100--Sobic006G261000 Sobic001G388100--Sobic009G214700 Sobic007G075200 Sobic007G075200 Sobic001G388100--Sobic007G075200 Sobic006G196700 Sobic006G196700 Sobic001G388100--Sobic006G196700 Sobic001G388100--Sobic003G046900 Sobic009G150800--Sobic001G388100 Sobic009G150800--Sobic003G241400 Sobic009G150800--Sobic001G495850 Sobic009G150800--Sobic006G261000 Sobic009G150800--Sobic009G214700 Sobic009G150800--Sobic007G075200 Sobic002G213050 Sobic002G213050 Sobic009G150800--Sobic002G213050 Sobic006G018500 Sobic006G018500 Sobic009G150800--Sobic006G018500 Sobic005G199500 Sobic005G199500 Sobic009G150800--Sobic005G199500
Octagon: transcription factors


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