Gene annotation
Transcriptome id Sobic.003G009900.1,Sobic.003G009900.2
Synonym CYP71A25, Sb03g001040
Functional annotation cytochrome P450, putative, expressed
UniProt A0A1W0VVB2 , C5XK89
Pfam PF00067
Panther DB PTHR24298 PTHR24298:SF134
NCBI CDD KOG0156; Cytochrome P450 CYP2 subfamily
KEGG Orthology -
Gene Ontology GO:0016705; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT3G48280 : cytochrome P450, family 71, subfamily A, polypeptide 25
RAP-DB (Rice) LOC_Os01g12740.1 : cytochrome P450, putative, expressed
MaizeGDB (Corn) Zm00025a022839
Brachypodium KQJ84507 , PNT65187 , PNT65188 , KQJ91555 , KQK12293 , KQK06668
Barley HORVU5Hr1G112130.3 , HORVU5Hr1G112130.1 , HORVU7Hr1G107280.1 , HORVU7Hr1G107280.2 , HORVU3Hr1G031000.1 , HORVU3Hr1G031000.3 , HORVU3Hr1G031000.2 , HORVU5Hr1G111760.1
Wheat TraesCS5D02G514700 , TraesCS5B02G384900 , TraesCS4A02G358200 , TraesCS3B02G179600 , TraesCS3A02G152500 , TraesCS3B02G179500 , TraesCS3A02G152700 , TraesCS3D02G160300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G084200 fasciclin domain containing protein, expressed -
2 Sobic.002G020000 wax synthase, putative, expressed -
3 Sobic.009G115050 - -
4 Sobic.002G329500 Beta amylase BAM (Zm)(PubMedID : 27208977)@beta-amylase, putative, expressed K01177: beta-amylase
5 Sobic.005G212400 Leucine Rich Repeat family protein, expressed -
6 Sobic.002G415400 - -
7 Sobic.001G127700 possible lysine decarboxylase domain containing protein, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
8 Sobic.002G415300 - -
9 Sobic.008G163200 OsSCP9 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
10 Sobic.001G435600 - -
11 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
12 Sobic.001G323801 - -
13 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
14 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
15 Sobic.003G114200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
16 Sobic.006G172700 LTPL122 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.001G003600 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.004G060700 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
19 Sobic.005G162000 cytochrome P450, putative, expressed K05917: sterol 14alpha-demethylase
20 Sobic.005G110436 - -


Gene co-expression network
sample Sobic003G009900 Sobic003G009900 Sobic008G084200 Sobic008G084200 Sobic003G009900--Sobic008G084200 Sobic002G020000 Sobic002G020000 Sobic003G009900--Sobic002G020000 Sobic009G115050 Sobic009G115050 Sobic003G009900--Sobic009G115050 Sobic002G329500 Sobic002G329500 Sobic003G009900--Sobic002G329500 Sobic005G212400 Sobic005G212400 Sobic003G009900--Sobic005G212400 Sobic002G415400 Sobic002G415400 Sobic003G009900--Sobic002G415400 Sobic001G127700 Sobic001G127700 Sobic003G009900--Sobic001G127700 Sobic002G415300 Sobic002G415300 Sobic003G009900--Sobic002G415300 Sobic008G163200 Sobic008G163200 Sobic003G009900--Sobic008G163200 Sobic006G238000 Sobic006G238000 Sobic008G084200--Sobic006G238000 Sobic001G076500 Sobic001G076500 Sobic008G084200--Sobic001G076500 Sobic007G127600 Sobic007G127600 Sobic008G084200--Sobic007G127600 Sobic004G231800 Sobic004G231800 Sobic008G084200--Sobic004G231800 Sobic008G084200--Sobic002G020000 Sobic010G233800 Sobic010G233800 Sobic008G084200--Sobic010G233800 Sobic001G427000 Sobic001G427000 Sobic008G084200--Sobic001G427000 Sobic001G366500 Sobic001G366500 Sobic008G084200--Sobic001G366500 Sobic008G084200--Sobic002G415400 Sobic005G110436 Sobic005G110436 Sobic002G020000--Sobic005G110436 Sobic002G020000--Sobic009G115050 Sobic001G003600 Sobic001G003600 Sobic002G020000--Sobic001G003600 Sobic003G096100 Sobic003G096100 Sobic002G020000--Sobic003G096100 Sobic004G076000 Sobic004G076000 Sobic002G020000--Sobic004G076000 Sobic002G020000--Sobic002G329500 Sobic002G020100 Sobic002G020100 Sobic002G020000--Sobic002G020100 Sobic001G394250 Sobic001G394250 Sobic002G020000--Sobic001G394250 Sobic006G172700 Sobic006G172700 Sobic002G020000--Sobic006G172700 Sobic009G115050--Sobic002G329500 Sobic009G115050--Sobic001G003600 Sobic009G115050--Sobic002G415400 Sobic001G435600 Sobic001G435600 Sobic009G115050--Sobic001G435600 Sobic009G115050--Sobic002G415300 Sobic009G115050--Sobic004G076000 Sobic009G115050--Sobic005G110436 Sobic009G115050--Sobic001G127700 Sobic009G115050--Sobic002G020100 Sobic002G329500--Sobic009G115050 Sobic002G329500--Sobic002G415400 Sobic002G329500--Sobic001G435600 Sobic002G329500--Sobic002G415300 Sobic002G329500--Sobic001G003600 Sobic004G060700 Sobic004G060700 Sobic002G329500--Sobic004G060700 Sobic002G329500--Sobic001G127700 Sobic003G058600 Sobic003G058600 Sobic002G329500--Sobic003G058600 Sobic002G329500--Sobic004G076000 Sobic005G212400--Sobic001G127700 Sobic005G212400--Sobic002G415400 Sobic010G124200 Sobic010G124200 Sobic005G212400--Sobic010G124200 Sobic005G212400--Sobic002G415300 Sobic005G212400--Sobic006G172700 Sobic005G212400--Sobic009G115050 Sobic005G212400--Sobic001G435600 Sobic005G212400--Sobic004G060700 Sobic005G212400--Sobic002G329500 Sobic002G415400--Sobic002G415300 Sobic002G415400--Sobic001G435600 Sobic002G415400--Sobic004G060700 Sobic003G068300 Sobic003G068300 Sobic002G415400--Sobic003G068300 Sobic002G415400--Sobic008G163200 Sobic002G415400--Sobic009G115050 Sobic002G416950 Sobic002G416950 Sobic002G415400--Sobic002G416950 Sobic002G415400--Sobic002G329500 Sobic006G238100 Sobic006G238100 Sobic002G415400--Sobic006G238100 Sobic001G127700--Sobic006G172700 Sobic001G127700--Sobic009G115050 Sobic001G127700--Sobic005G212400 Sobic001G127700--Sobic004G060700 Sobic001G127700--Sobic001G003600 Sobic001G127700--Sobic001G435600 Sobic007G170800 Sobic007G170800 Sobic001G127700--Sobic007G170800 Sobic001G127700--Sobic002G329500 Sobic001G127700--Sobic002G415400 Sobic002G415300--Sobic002G415400 Sobic002G415300--Sobic004G060700 Sobic002G415300--Sobic008G163200 Sobic002G415300--Sobic001G435600 Sobic002G415300--Sobic003G068300 Sobic002G415300--Sobic002G416950 Sobic002G415300--Sobic009G115050 Sobic002G415300--Sobic002G329500 Sobic002G415300--Sobic007G170800 Sobic008G163200--Sobic002G415300 Sobic008G163200--Sobic004G060700 Sobic008G163200--Sobic002G415400 Sobic008G163200--Sobic002G416950 Sobic008G163200--Sobic007G170800 Sobic008G163200--Sobic003G068300 Sobic001G379300 Sobic001G379300 Sobic008G163200--Sobic001G379300 Sobic001G255300 Sobic001G255300 Sobic008G163200--Sobic001G255300 Sobic008G163200--Sobic001G435600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.