Gene annotation
Transcriptome id Sobic.003G022700.1
Synonym ATGA2OX1, GA2OX1, Sb03g002150
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
gibberellin 2-beta-dioxygenase, putative, expressed
UniProt C5XL46
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF106
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology K04125; gibberellin 2beta-dioxygenase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G78440 : Arabidopsis thaliana gibberellin 2-oxidase 1
RAP-DB (Rice) LOC_Os01g11150.1 : gibberellin 2-beta-dioxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a022943 , Zm00025a035886
Brachypodium KQK03260
Barley HORVU3Hr1G029010.3 , HORVU3Hr1G029010.2 , HORVU3Hr1G029010.1 , HORVU3Hr1G029010.7 , HORVU3Hr1G029010.6 , HORVU3Hr1G029010.5 , HORVU3Hr1G029010.4 , HORVU3Hr1G029010.9 , HORVU3Hr1G029010.8
Wheat TraesCS1A02G126400 , TraesCS3B02G166100 , TraesCS1D02G127000 , TraesCS3D02G149600 , TraesCS1B02G145600 , TraesCS3A02G133400
Populus -


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cDNA sequences
Sobic.003G022700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G152400 glutamine cyclotransferase precursor, putative, expressed -
2 Sobic.006G063500 protein binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
3 Sobic.008G137800 expressed protein -
4 Sobic.002G253400 FAD dependent oxidoreductase domain containing protein, expressed -
5 Sobic.002G349400 - -
6 Sobic.006G170200 amino acid kinase, putative, expressed K00930: acetylglutamate kinase
7 Sobic.001G267000 - -
8 Sobic.006G245000 - -
9 Sobic.008G023100 - -
10 Sobic.001G448700 "TUD1(Ortholog in rice:Hu et al., 2013)"(PubMedID : 31659845)@U-box domain containing protein, expressed -
11 Sobic.002G066901 - -
12 Sobic.004G117800 Ser/Thr protein phosphatase family protein, putative, expressed K18467: vacuolar protein sorting-associated protein 29
13 Sobic.009G210900 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
14 Sobic.002G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
15 Sobic.001G510300 cytochrome P450 protein, putative, expressed -
16 Sobic.001G099800 nucleic acid binding protein, putative, expressed -
17 Sobic.007G029000 TKL_IRAK_DUF26-lc.4 - DUF26 kinases have homology to DUF26 containing loci, expressed -
18 Sobic.006G248350 - -
19 Sobic.004G007500 cytochrome P450, putative, expressed K10528: hydroperoxide lyase
20 Sobic.009G000900 methyltransferase, putative, expressed K08241: jasmonate O-methyltransferase


Gene co-expression network
sample Sobic003G022700 Sobic003G022700 Sobic009G152400 Sobic009G152400 Sobic003G022700--Sobic009G152400 Sobic006G063500 Sobic006G063500 Sobic003G022700--Sobic006G063500 Sobic008G137800 Sobic008G137800 Sobic003G022700--Sobic008G137800 Sobic002G253400 Sobic002G253400 Sobic003G022700--Sobic002G253400 Sobic002G349400 Sobic002G349400 Sobic003G022700--Sobic002G349400 Sobic006G170200 Sobic006G170200 Sobic003G022700--Sobic006G170200 Sobic001G267000 Sobic001G267000 Sobic003G022700--Sobic001G267000 Sobic006G245000 Sobic006G245000 Sobic003G022700--Sobic006G245000 Sobic008G023100 Sobic008G023100 Sobic003G022700--Sobic008G023100 Sobic009G152400--Sobic008G137800 Sobic009G152400--Sobic006G170200 Sobic008G111300 Sobic008G111300 Sobic009G152400--Sobic008G111300 Sobic003G096500 Sobic003G096500 Sobic009G152400--Sobic003G096500 Sobic004G078600 Sobic004G078600 Sobic009G152400--Sobic004G078600 Sobic009G019000 Sobic009G019000 Sobic009G152400--Sobic009G019000 Sobic001G276100 Sobic001G276100 Sobic009G152400--Sobic001G276100 Sobic009G000900 Sobic009G000900 Sobic009G152400--Sobic009G000900 Sobic003G208300 Sobic003G208300 Sobic009G152400--Sobic003G208300 Sobic003G402200 Sobic003G402200 Sobic006G063500--Sobic003G402200 Sobic004G019400 Sobic004G019400 Sobic006G063500--Sobic004G019400 Sobic004G096100 Sobic004G096100 Sobic006G063500--Sobic004G096100 Sobic009G205600 Sobic009G205600 Sobic006G063500--Sobic009G205600 Sobic001G201800 Sobic001G201800 Sobic006G063500--Sobic001G201800 Sobic003G098700 Sobic003G098700 Sobic006G063500--Sobic003G098700 Sobic003G270500 Sobic003G270500 Sobic006G063500--Sobic003G270500 Sobic001G315800 Sobic001G315800 Sobic006G063500--Sobic001G315800 Sobic006G063500--Sobic008G111300 Sobic003G214000 Sobic003G214000 Sobic008G137800--Sobic003G214000 Sobic008G137800--Sobic004G078600 Sobic001G145050 Sobic001G145050 Sobic008G137800--Sobic001G145050 Sobic001G179100 Sobic001G179100 Sobic008G137800--Sobic001G179100 Sobic008G137800--Sobic001G315800 Sobic008G137800--Sobic009G152400 Sobic008G137800--Sobic003G402200 Sobic004G068700 Sobic004G068700 Sobic008G137800--Sobic004G068700 Sobic006G060800 Sobic006G060800 Sobic008G137800--Sobic006G060800 Sobic008G181801 Sobic008G181801 Sobic002G253400--Sobic008G181801 Sobic005G085500 Sobic005G085500 Sobic002G253400--Sobic005G085500 SobicK044407 SobicK044407 Sobic002G253400--SobicK044407 Sobic003G310200 Sobic003G310200 Sobic002G253400--Sobic003G310200 Sobic002G253400--Sobic002G349400 Sobic001G012000 Sobic001G012000 Sobic002G253400--Sobic001G012000 Sobic005G193600 Sobic005G193600 Sobic002G253400--Sobic005G193600 Sobic009G241500 Sobic009G241500 Sobic002G253400--Sobic009G241500 Sobic006G045000 Sobic006G045000 Sobic002G253400--Sobic006G045000 Sobic002G349400--Sobic006G045000 Sobic004G209500 Sobic004G209500 Sobic002G349400--Sobic004G209500 Sobic002G349400--Sobic001G315800 Sobic002G349400--Sobic008G181801 Sobic005G226100 Sobic005G226100 Sobic002G349400--Sobic005G226100 Sobic002G349400--Sobic009G241500 Sobic009G216050 Sobic009G216050 Sobic002G349400--Sobic009G216050 Sobic002G349400--Sobic002G253400 Sobic001G320700 Sobic001G320700 Sobic002G349400--Sobic001G320700 Sobic001G416300 Sobic001G416300 Sobic006G170200--Sobic001G416300 Sobic004G117800 Sobic004G117800 Sobic006G170200--Sobic004G117800 Sobic004G268100 Sobic004G268100 Sobic006G170200--Sobic004G268100 Sobic006G170200--Sobic003G402200 Sobic009G029700 Sobic009G029700 Sobic006G170200--Sobic009G029700 Sobic001G202500 Sobic001G202500 Sobic006G170200--Sobic001G202500 Sobic002G281800 Sobic002G281800 Sobic006G170200--Sobic002G281800 Sobic006G170200--Sobic009G000900 Sobic006G170200--Sobic009G152400 Sobic003G128550 Sobic003G128550 Sobic001G267000--Sobic003G128550 Sobic001G178800 Sobic001G178800 Sobic001G267000--Sobic001G178800 Sobic009G070300 Sobic009G070300 Sobic001G267000--Sobic009G070300 Sobic005G115400 Sobic005G115400 Sobic001G267000--Sobic005G115400 Sobic005G117200 Sobic005G117200 Sobic001G267000--Sobic005G117200 Sobic009G097900 Sobic009G097900 Sobic001G267000--Sobic009G097900 Sobic002G066901 Sobic002G066901 Sobic001G267000--Sobic002G066901 Sobic001G192250 Sobic001G192250 Sobic001G267000--Sobic001G192250 Sobic009G128000 Sobic009G128000 Sobic001G267000--Sobic009G128000 Sobic006G245000--Sobic002G066901 Sobic007G181600 Sobic007G181600 Sobic006G245000--Sobic007G181600 Sobic004G298700 Sobic004G298700 Sobic006G245000--Sobic004G298700 Sobic006G180900 Sobic006G180900 Sobic006G245000--Sobic006G180900 Sobic008G051400 Sobic008G051400 Sobic006G245000--Sobic008G051400 Sobic010G079800 Sobic010G079800 Sobic006G245000--Sobic010G079800 Sobic001G310500 Sobic001G310500 Sobic006G245000--Sobic001G310500 Sobic007G140500 Sobic007G140500 Sobic006G245000--Sobic007G140500 Sobic006G245000--Sobic001G267000 Sobic002G047366 Sobic002G047366 Sobic008G023100--Sobic002G047366 Sobic006G115200 Sobic006G115200 Sobic008G023100--Sobic006G115200 Sobic007G048500 Sobic007G048500 Sobic008G023100--Sobic007G048500 Sobic008G023100--Sobic003G022700 Sobic007G029900 Sobic007G029900 Sobic008G023100--Sobic007G029900 Sobic010G187400 Sobic010G187400 Sobic008G023100--Sobic010G187400 Sobic001G133200 Sobic001G133200 Sobic008G023100--Sobic001G133200
Octagon: transcription factors


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