Gene annotation
Transcriptome id Sobic.002G081300.1
Synonym ethylene response factor 18, SbERF18, Sb02g006780, CRF3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Not investigated (PubMedID : 23766026)
AP2 domain containing protein, expressed
UniProt A0A1B6Q9V5
Pfam PF00847
Panther DB PTHR31190 PTHR31190:SF32
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G27950 : cytokinin response factor 4
RAP-DB (Rice) LOC_Os03g60120.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a046712 , Zm00025a035951 , Zm00025a013386 , Zm00025a053203 , Zm00025a055020 , Zm00025a022855 , Zm00025a033320 , Zm00025a057002 , Zm00025a001066 , Zm00025a045437 , Zm00025a021006 , Zm00025a022123 , Zm00025a038708 , Zm00025a033171 , Zm00025a009843 , Zm00025a000671
Brachypodium KQJ90021 , KQJ98629 , PNT61818 , KQK00491 , PNT62439 , KQK10781 , KQJ98221 , KQK12503 , KQJ86112 , KQJ94686
Barley HORVU6Hr1G060220.6 , HORVU6Hr1G060220.7 , HORVU6Hr1G060220.4 , HORVU6Hr1G060220.5 , HORVU6Hr1G060220.3 , HORVU6Hr1G060220.2 , HORVU7Hr1G037180.1 , HORVU6Hr1G060220.1 , HORVU7Hr1G037180.2 , HORVU5Hr1G018720.1 , HORVU3Hr1G030310.1 , HORVU6Hr1G074970.3 , HORVU6Hr1G074970.2 , HORVU6Hr1G074970.1 , HORVU5Hr1G058270.1 , HORVU5Hr1G058270.2 , HORVU5Hr1G058270.5 , HORVU5Hr1G058270.4 , HORVU5Hr1G058270.6 , HORVU4Hr1G000960.1 , HORVU6Hr1G060140.3 , HORVU6Hr1G060140.1
Wheat TraesCS5D02G200900 , TraesCS5B02G193200 , TraesCS4A02G035400
Populus -


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cDNA sequences
Sobic.002G081300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G265500 expressed protein -
2 Sobic.002G317350 - -
3 Sobic.002G370000 gibberellin receptor GID1L2, putative, expressed -
4 Sobic.002G297900 CDGSH iron sulfur domain-containing protein 1, putative, expressed -
5 Sobic.001G472000 Polyamine oxidase 1("PubMedID : 26759170,PubMedID : 24597475")@amine oxidase, flavin-containing, domain containing protein, expressed K13366: MPAO, polyamine oxidase
6 Sobic.007G075700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
7 Sobic.008G107800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SWIB/MDM2 domain containing protein, expressed -
8 Sobic.007G165500 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
9 Sobic.001G065500 ZOS3-19 - C2H2 zinc finger protein, expressed -
10 Sobic.009G237500 expressed protein -
11 Sobic.001G146100 expressed protein -
12 Sobic.001G366500 cytochrome P450, putative, expressed -
13 Sobic.007G170800 Fatty acyl CoA reductase 1 FAR1 (At)(PubMedID : 27208977)@male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
14 Sobic.001G453200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
15 Sobic.002G083200 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
16 Sobic.001G276100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
17 Sobic.010G240600 - -
18 Sobic.004G296800 3-isopropylmalate dehydratase small subunit 2, putative, expressed K01704: leuD, 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
19 Sobic.003G114200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
20 Sobic.007G123800 DUF581 domain containing protein, expressed -


Gene co-expression network
sample Sobic002G081300 Sobic002G081300 Sobic010G265500 Sobic010G265500 Sobic002G081300--Sobic010G265500 Sobic002G317350 Sobic002G317350 Sobic002G081300--Sobic002G317350 Sobic002G370000 Sobic002G370000 Sobic002G081300--Sobic002G370000 Sobic002G297900 Sobic002G297900 Sobic002G081300--Sobic002G297900 Sobic001G472000 Sobic001G472000 Sobic002G081300--Sobic001G472000 Sobic007G075700 Sobic007G075700 Sobic002G081300--Sobic007G075700 Sobic008G107800 Sobic008G107800 Sobic002G081300--Sobic008G107800 Sobic007G165500 Sobic007G165500 Sobic002G081300--Sobic007G165500 Sobic001G065500 Sobic001G065500 Sobic002G081300--Sobic001G065500 Sobic005G021600 Sobic005G021600 Sobic010G265500--Sobic005G021600 Sobic003G187000 Sobic003G187000 Sobic010G265500--Sobic003G187000 Sobic004G343100 Sobic004G343100 Sobic010G265500--Sobic004G343100 Sobic010G218600 Sobic010G218600 Sobic010G265500--Sobic010G218600 Sobic007G178500 Sobic007G178500 Sobic010G265500--Sobic007G178500 Sobic009G028400 Sobic009G028400 Sobic010G265500--Sobic009G028400 Sobic001G498300 Sobic001G498300 Sobic010G265500--Sobic001G498300 Sobic008G063100 Sobic008G063100 Sobic010G265500--Sobic008G063100 Sobic001G447700 Sobic001G447700 Sobic010G265500--Sobic001G447700 Sobic004G193600 Sobic004G193600 Sobic002G317350--Sobic004G193600 Sobic002G317350--Sobic002G081300 Sobic004G301200 Sobic004G301200 Sobic002G317350--Sobic004G301200 Sobic003G435100 Sobic003G435100 Sobic002G317350--Sobic003G435100 Sobic001G099800 Sobic001G099800 Sobic002G317350--Sobic001G099800 Sobic005G077633 Sobic005G077633 Sobic002G317350--Sobic005G077633 Sobic004G178400 Sobic004G178400 Sobic002G317350--Sobic004G178400 Sobic001G418800 Sobic001G418800 Sobic002G317350--Sobic001G418800 Sobic002G428900 Sobic002G428900 Sobic002G317350--Sobic002G428900 Sobic002G242600 Sobic002G242600 Sobic002G370000--Sobic002G242600 Sobic004G044000 Sobic004G044000 Sobic002G370000--Sobic004G044000 Sobic002G190800 Sobic002G190800 Sobic002G370000--Sobic002G190800 Sobic004G314800 Sobic004G314800 Sobic002G370000--Sobic004G314800 Sobic002G370000--Sobic001G065500 Sobic007G034500 Sobic007G034500 Sobic002G370000--Sobic007G034500 Sobic006G280050 Sobic006G280050 Sobic002G370000--Sobic006G280050 Sobic008G123600 Sobic008G123600 Sobic002G370000--Sobic008G123600 Sobic001G120000 Sobic001G120000 Sobic002G370000--Sobic001G120000 Sobic008G112300 Sobic008G112300 Sobic002G297900--Sobic008G112300 Sobic004G076000 Sobic004G076000 Sobic002G297900--Sobic004G076000 Sobic003G295800 Sobic003G295800 Sobic002G297900--Sobic003G295800 Sobic010G215500 Sobic010G215500 Sobic002G297900--Sobic010G215500 Sobic002G297900--Sobic008G123600 Sobic003G328200 Sobic003G328200 Sobic002G297900--Sobic003G328200 Sobic007G185100 Sobic007G185100 Sobic002G297900--Sobic007G185100 Sobic001G017000 Sobic001G017000 Sobic002G297900--Sobic001G017000 Sobic004G311100 Sobic004G311100 Sobic002G297900--Sobic004G311100 Sobic008G189500 Sobic008G189500 Sobic001G472000--Sobic008G189500 Sobic003G007800 Sobic003G007800 Sobic001G472000--Sobic003G007800 Sobic005G029400 Sobic005G029400 Sobic001G472000--Sobic005G029400 Sobic009G161100 Sobic009G161100 Sobic001G472000--Sobic009G161100 Sobic009G070600 Sobic009G070600 Sobic001G472000--Sobic009G070600 Sobic001G255300 Sobic001G255300 Sobic001G472000--Sobic001G255300 Sobic001G315200 Sobic001G315200 Sobic001G472000--Sobic001G315200 Sobic001G541300 Sobic001G541300 Sobic001G472000--Sobic001G541300 Sobic004G249400 Sobic004G249400 Sobic001G472000--Sobic004G249400 Sobic010G240700 Sobic010G240700 Sobic007G075700--Sobic010G240700 Sobic003G234101 Sobic003G234101 Sobic007G075700--Sobic003G234101 Sobic010G240600 Sobic010G240600 Sobic007G075700--Sobic010G240600 Sobic010G240500 Sobic010G240500 Sobic007G075700--Sobic010G240500 Sobic007G009600 Sobic007G009600 Sobic007G075700--Sobic007G009600 Sobic002G416950 Sobic002G416950 Sobic007G075700--Sobic002G416950 Sobic007G170800 Sobic007G170800 Sobic007G075700--Sobic007G170800 Sobic003G191000 Sobic003G191000 Sobic007G075700--Sobic003G191000 Sobic004G060700 Sobic004G060700 Sobic007G075700--Sobic004G060700 Sobic008G107800--Sobic007G034500 Sobic001G357200 Sobic001G357200 Sobic008G107800--Sobic001G357200 Sobic008G107800--Sobic002G190800 Sobic004G191200 Sobic004G191200 Sobic008G107800--Sobic004G191200 Sobic003G202300 Sobic003G202300 Sobic008G107800--Sobic003G202300 Sobic001G191000 Sobic001G191000 Sobic008G107800--Sobic001G191000 Sobic001G395300 Sobic001G395300 Sobic008G107800--Sobic001G395300 Sobic004G168500 Sobic004G168500 Sobic008G107800--Sobic004G168500 Sobic008G107800--Sobic006G280050 Sobic007G165500--Sobic002G297900 Sobic009G238300 Sobic009G238300 Sobic007G165500--Sobic009G238300 Sobic004G326500 Sobic004G326500 Sobic007G165500--Sobic004G326500 Sobic002G267900 Sobic002G267900 Sobic007G165500--Sobic002G267900 Sobic007G165500--Sobic004G311100 Sobic002G353300 Sobic002G353300 Sobic007G165500--Sobic002G353300 Sobic004G020300 Sobic004G020300 Sobic007G165500--Sobic004G020300 Sobic008G172700 Sobic008G172700 Sobic007G165500--Sobic008G172700 Sobic007G165500--Sobic003G328200 Sobic001G065500--Sobic003G328200 Sobic001G065500--Sobic006G280050 Sobic001G065500--Sobic004G314800 Sobic001G065500--Sobic001G191000 Sobic001G065500--Sobic009G028400 Sobic001G065500--Sobic010G265500 Sobic006G107600 Sobic006G107600 Sobic001G065500--Sobic006G107600 Sobic001G065500--Sobic003G187000 Sobic001G240000 Sobic001G240000 Sobic001G065500--Sobic001G240000
Octagon: transcription factors


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