Gene annotation
Transcriptome id Sobic.003G027300.1
Synonym Sb03g002560, RALFL33
Functional annotation RALFL17 - Rapid ALkalinization Factor RALF family protein precursor, expressed
UniProt C5XL88
Pfam PF05498
Panther DB PTHR33136 PTHR33136:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G15800 : ralf-like 33
RAP-DB (Rice) LOC_Os05g11330.1 : RALFL19 - Rapid ALkalinization Factor RALF family protein precursor, expressed
MaizeGDB (Corn) Zm00025a043141 , Zm00025a022980 , Zm00025a035863
Brachypodium -
Barley HORVU3Hr1G026830.1 , HORVU1Hr1G080640.1 , HORVU1Hr1G080640.2
Wheat -
Populus -


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cDNA sequences
Sobic.003G027300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G318300 endoglucanase, putative, expressed K01179: endoglucanase
2 Sobic.010G230200 myb-like DNA-binding domain containing protein, expressed K09422: transcription factor MYB, plant
3 Sobic.009G087200 AGC_PVPK_like_kin82y.12 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
4 Sobic.008G043400 - -
5 Sobic.005G031700 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
6 Sobic.006G071096 - -
7 Sobic.001G511100 expressed protein -
8 Sobic.009G259600 aspartyl protease family protein, putative, expressed -
9 Sobic.006G219700 nitrate-induced NOI protein, expressed -
10 Sobic.001G473700 OsSCP11 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
11 Sobic.004G147700 pectinesterase inhibitor domain containing protein, putative, expressed -
12 Sobic.003G197500 protein kinase domain containing protein, putative, expressed -
13 Sobic.005G044600 pyridine nucleotide-disulphide oxidoreductase family protein, putative, expressed -
14 Sobic.009G177300 monocopper oxidase, putative, expressed -
15 Sobic.009G216400 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
16 Sobic.002G395100 DEF8 - Defensin and Defensin-like DEFL family, expressed -
17 Sobic.002G282600 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
18 Sobic.002G091300 pectinesterase inhibitor domain containing protein, expressed -
19 Sobic.003G114900 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
20 Sobic.009G116100 conserved hypothetical protein -


Gene co-expression network
sample Sobic003G027300 Sobic003G027300 Sobic004G318300 Sobic004G318300 Sobic003G027300--Sobic004G318300 Sobic010G230200 Sobic010G230200 Sobic003G027300--Sobic010G230200 Sobic009G087200 Sobic009G087200 Sobic003G027300--Sobic009G087200 Sobic008G043400 Sobic008G043400 Sobic003G027300--Sobic008G043400 Sobic005G031700 Sobic005G031700 Sobic003G027300--Sobic005G031700 Sobic006G071096 Sobic006G071096 Sobic003G027300--Sobic006G071096 Sobic001G511100 Sobic001G511100 Sobic003G027300--Sobic001G511100 Sobic009G259600 Sobic009G259600 Sobic003G027300--Sobic009G259600 Sobic006G219700 Sobic006G219700 Sobic003G027300--Sobic006G219700 Sobic004G318300--Sobic003G027300 Sobic004G318300--Sobic010G230200 Sobic004G318300--Sobic009G087200 Sobic004G318300--Sobic008G043400 Sobic004G318300--Sobic009G259600 Sobic004G318300--Sobic006G219700 Sobic004G318300--Sobic005G031700 Sobic004G318300--Sobic001G511100 Sobic003G197500 Sobic003G197500 Sobic004G318300--Sobic003G197500 Sobic010G230200--Sobic003G027300 Sobic010G230200--Sobic005G031700 Sobic010G230200--Sobic004G318300 Sobic010G230200--Sobic008G043400 Sobic010G230200--Sobic001G511100 Sobic010G230200--Sobic009G087200 Sobic004G147700 Sobic004G147700 Sobic010G230200--Sobic004G147700 Sobic010G230200--Sobic003G197500 Sobic003G114900 Sobic003G114900 Sobic010G230200--Sobic003G114900 Sobic009G087200--Sobic003G027300 Sobic009G087200--Sobic004G318300 Sobic001G473700 Sobic001G473700 Sobic009G087200--Sobic001G473700 Sobic009G087200--Sobic010G230200 Sobic009G087200--Sobic006G071096 Sobic009G087200--Sobic005G031700 Sobic009G177300 Sobic009G177300 Sobic009G087200--Sobic009G177300 Sobic009G087200--Sobic008G043400 Sobic009G216400 Sobic009G216400 Sobic009G087200--Sobic009G216400 Sobic008G043400--Sobic003G197500 Sobic008G043400--Sobic001G511100 Sobic008G043400--Sobic010G230200 Sobic008G043400--Sobic004G318300 Sobic008G043400--Sobic005G031700 Sobic008G043400--Sobic003G114900 Sobic008G043400--Sobic003G027300 Sobic002G395100 Sobic002G395100 Sobic008G043400--Sobic002G395100 Sobic008G043400--Sobic006G219700 Sobic005G031700--Sobic010G230200 Sobic005G031700--Sobic001G511100 Sobic005G031700--Sobic008G043400 Sobic005G031700--Sobic003G027300 Sobic005G031700--Sobic004G147700 Sobic009G116100 Sobic009G116100 Sobic005G031700--Sobic009G116100 Sobic005G031700--Sobic004G318300 Sobic002G091300 Sobic002G091300 Sobic005G031700--Sobic002G091300 Sobic002G282600 Sobic002G282600 Sobic005G031700--Sobic002G282600 Sobic006G071096--Sobic001G473700 Sobic006G071096--Sobic009G177300 Sobic006G071096--Sobic003G027300 Sobic006G071096--Sobic009G087200 Sobic006G071096--Sobic009G216400 Sobic006G071096--Sobic004G318300 Sobic002G351500 Sobic002G351500 Sobic006G071096--Sobic002G351500 Sobic006G071096--Sobic010G230200 Sobic002G066100 Sobic002G066100 Sobic006G071096--Sobic002G066100 Sobic001G511100--Sobic008G043400 Sobic001G511100--Sobic010G230200 Sobic001G511100--Sobic005G031700 Sobic001G511100--Sobic003G197500 Sobic001G511100--Sobic003G114900 Sobic001G511100--Sobic009G116100 Sobic003G009600 Sobic003G009600 Sobic001G511100--Sobic003G009600 Sobic002G427500 Sobic002G427500 Sobic001G511100--Sobic002G427500 Sobic001G511100--Sobic004G318300 Sobic009G259600--Sobic006G219700 Sobic009G259600--Sobic004G318300 Sobic009G259600--Sobic008G043400 Sobic009G259600--Sobic003G027300 Sobic009G259600--Sobic002G395100 Sobic009G259600--Sobic003G197500 Sobic001G400400 Sobic001G400400 Sobic009G259600--Sobic001G400400 Sobic009G259600--Sobic010G230200 Sobic009G259600--Sobic009G087200 Sobic006G219700--Sobic009G259600 Sobic006G219700--Sobic002G395100 Sobic006G219700--Sobic004G318300 Sobic006G219700--Sobic008G043400 Sobic006G219700--Sobic003G027300 Sobic006G219700--Sobic001G400400 Sobic006G219700--Sobic003G197500 Sobic006G219700--Sobic010G230200 Sobic006G219700--Sobic009G087200
Octagon: transcription factors


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