Gene annotation
Transcriptome id Sobic.003G049000.1
Synonym Sb03g004260
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt C5XND4
Pfam PF00642
Panther DB PTHR12547 PTHR12547:SF60
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G35430 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os01g07930.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a035731
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G049000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G102600 - -
2 Sobic.004G041000 uncharacterized Cys-rich domain containing protein, putative, expressed -
3 Sobic.005G050700 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
4 Sobic.001G122700 expressed protein -
5 Sobic.005G149650 - -
6 Sobic.002G018250 - -
7 Sobic.010G058400 expressed protein -
8 Sobic.002G018000 - -
9 Sobic.001G127600 ZOS3-15 - C2H2 zinc finger protein, expressed -
10 Sobic.007G188500 plant protein of unknown function domain containing protein, expressed -
11 Sobic.002G089300 LTPL54 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
12 Sobic.005G031600 F-box protein interaction domain containing protein, expressed -
13 Sobic.010G200300 AP2 domain containing protein, expressed -
14 Sobic.010G248100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ATEXO70G1, putative, expressed K07195: EXOC7, exocyst complex component 7
15 Sobic.001G268100 OsFBX368 - F-box domain containing protein, expressed -
16 Sobic.001G379800 OsFBX72 - F-box domain containing protein, expressed -
17 Sobic.006G087800 DDT domain containing protein, putative, expressed -
18 Sobic.006G234500 OsFBD10 - F-box and FBD domain containing protein, expressed -
19 Sobic.001G458500 - -
20 Sobic.010G207450 - -


Gene co-expression network
sample Sobic003G049000 Sobic003G049000 Sobic005G102600 Sobic005G102600 Sobic003G049000--Sobic005G102600 Sobic004G041000 Sobic004G041000 Sobic003G049000--Sobic004G041000 Sobic005G050700 Sobic005G050700 Sobic003G049000--Sobic005G050700 Sobic001G122700 Sobic001G122700 Sobic003G049000--Sobic001G122700 Sobic005G149650 Sobic005G149650 Sobic003G049000--Sobic005G149650 Sobic002G018250 Sobic002G018250 Sobic003G049000--Sobic002G018250 Sobic010G058400 Sobic010G058400 Sobic003G049000--Sobic010G058400 Sobic002G018000 Sobic002G018000 Sobic003G049000--Sobic002G018000 Sobic001G127600 Sobic001G127600 Sobic003G049000--Sobic001G127600 Sobic005G102600--Sobic001G122700 Sobic005G102600--Sobic001G127600 Sobic009G185000 Sobic009G185000 Sobic005G102600--Sobic009G185000 Sobic002G282800 Sobic002G282800 Sobic005G102600--Sobic002G282800 Sobic005G102600--Sobic002G018250 Sobic010G207450 Sobic010G207450 Sobic005G102600--Sobic010G207450 Sobic002G089300 Sobic002G089300 Sobic005G102600--Sobic002G089300 Sobic001G090900 Sobic001G090900 Sobic005G102600--Sobic001G090900 Sobic010G248150 Sobic010G248150 Sobic005G102600--Sobic010G248150 Sobic004G041000--Sobic003G049000 Sobic003G303000 Sobic003G303000 Sobic004G041000--Sobic003G303000 Sobic006G234500 Sobic006G234500 Sobic004G041000--Sobic006G234500 Sobic003G063600 Sobic003G063600 Sobic004G041000--Sobic003G063600 Sobic002G348200 Sobic002G348200 Sobic004G041000--Sobic002G348200 Sobic005G008700 Sobic005G008700 Sobic004G041000--Sobic005G008700 Sobic003G049100 Sobic003G049100 Sobic004G041000--Sobic003G049100 Sobic003G429101 Sobic003G429101 Sobic004G041000--Sobic003G429101 Sobic007G172900 Sobic007G172900 Sobic004G041000--Sobic007G172900 Sobic005G143800 Sobic005G143800 Sobic005G050700--Sobic005G143800 Sobic007G121800 Sobic007G121800 Sobic005G050700--Sobic007G121800 Sobic002G082350 Sobic002G082350 Sobic005G050700--Sobic002G082350 Sobic007G145300 Sobic007G145300 Sobic005G050700--Sobic007G145300 Sobic010G064050 Sobic010G064050 Sobic005G050700--Sobic010G064050 Sobic001G100650 Sobic001G100650 Sobic005G050700--Sobic001G100650 Sobic009G197350 Sobic009G197350 Sobic005G050700--Sobic009G197350 Sobic009G156700 Sobic009G156700 Sobic005G050700--Sobic009G156700 Sobic005G080075 Sobic005G080075 Sobic005G050700--Sobic005G080075 Sobic001G122700--Sobic001G127600 Sobic001G122700--Sobic005G102600 Sobic001G122700--Sobic002G089300 Sobic004G196900 Sobic004G196900 Sobic001G122700--Sobic004G196900 Sobic004G295200 Sobic004G295200 Sobic001G122700--Sobic004G295200 Sobic003G244401 Sobic003G244401 Sobic001G122700--Sobic003G244401 Sobic001G122700--Sobic010G248150 Sobic006G229400 Sobic006G229400 Sobic001G122700--Sobic006G229400 Sobic001G122700--Sobic009G185000 Sobic005G149650--Sobic005G050700 Sobic005G149650--Sobic005G143800 Sobic005G229232 Sobic005G229232 Sobic005G149650--Sobic005G229232 Sobic002G269800 Sobic002G269800 Sobic005G149650--Sobic002G269800 Sobic003G126700 Sobic003G126700 Sobic005G149650--Sobic003G126700 Sobic006G223700 Sobic006G223700 Sobic005G149650--Sobic006G223700 Sobic005G031600 Sobic005G031600 Sobic005G149650--Sobic005G031600 Sobic007G193000 Sobic007G193000 Sobic005G149650--Sobic007G193000 Sobic008G154200 Sobic008G154200 Sobic005G149650--Sobic008G154200 Sobic002G018250--Sobic010G207450 Sobic010G200100 Sobic010G200100 Sobic002G018250--Sobic010G200100 Sobic001G220600 Sobic001G220600 Sobic002G018250--Sobic001G220600 Sobic002G018250--Sobic005G102600 Sobic002G141050 Sobic002G141050 Sobic002G018250--Sobic002G141050 Sobic006G080200 Sobic006G080200 Sobic002G018250--Sobic006G080200 Sobic002G059100 Sobic002G059100 Sobic002G018250--Sobic002G059100 Sobic010G069700 Sobic010G069700 Sobic002G018250--Sobic010G069700 Sobic002G018250--Sobic002G018000 Sobic001G497800 Sobic001G497800 Sobic010G058400--Sobic001G497800 Sobic010G058400--Sobic006G234500 Sobic010G058400--Sobic003G049000 Sobic010G058400--Sobic004G041000 Sobic010G248100 Sobic010G248100 Sobic010G058400--Sobic010G248100 Sobic002G074500 Sobic002G074500 Sobic010G058400--Sobic002G074500 Sobic002G326900 Sobic002G326900 Sobic010G058400--Sobic002G326900 Sobic004G205700 Sobic004G205700 Sobic010G058400--Sobic004G205700 Sobic007G157400 Sobic007G157400 Sobic010G058400--Sobic007G157400 Sobic004G292833 Sobic004G292833 Sobic002G018000--Sobic004G292833 Sobic002G018000--Sobic010G200100 Sobic002G018000--Sobic001G220600 Sobic002G018000--Sobic002G018250 Sobic001G445300 Sobic001G445300 Sobic002G018000--Sobic001G445300 Sobic005G150200 Sobic005G150200 Sobic002G018000--Sobic005G150200 Sobic001G197700 Sobic001G197700 Sobic002G018000--Sobic001G197700 Sobic004G326700 Sobic004G326700 Sobic002G018000--Sobic004G326700 Sobic008G037100 Sobic008G037100 Sobic002G018000--Sobic008G037100 Sobic001G127600--Sobic001G122700 Sobic001G127600--Sobic005G102600 Sobic001G127600--Sobic002G089300 Sobic001G127600--Sobic004G196900 Sobic001G127600--Sobic006G229400 Sobic001G127600--Sobic009G185000 Sobic009G244450 Sobic009G244450 Sobic001G127600--Sobic009G244450 Sobic002G341400 Sobic002G341400 Sobic001G127600--Sobic002G341400 Sobic005G029300 Sobic005G029300 Sobic001G127600--Sobic005G029300
Octagon: transcription factors


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