Gene annotation
Transcriptome id Sobic.003G090500.2
Synonym Sb03g007580
Functional annotation expressed protein
UniProt A0A1W0VWD1
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF46
NCBI CDD -
KEGG Orthology K04506; E3 ubiquitin-protein ligase SIAH1
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G66650 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os01g03190.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G017000 OsFBX234 - F-box domain containing protein, expressed -
2 Sobic.002G017000 OsFBX234 - F-box domain containing protein, expressed -
3 Sobic.002G017000 OsFBX234 - F-box domain containing protein, expressed -
4 Sobic.002G007600 3-5 exonuclease domain-containing protein, putative, expressed -
5 Sobic.008G167100 cycloartenol synthase, putative, expressed -
6 Sobic.005G162300 cytochrome P450 51, putative, expressed K05917: sterol 14alpha-demethylase
7 Sobic.002G023400 expressed protein -
8 Sobic.002G120501 - -
9 Sobic.006G085200 CorA-like magnesium transporter protein, putative, expressed -
10 Sobic.002G094500 cytochrome P450, putative, expressed -
11 Sobic.005G218100 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed -
12 Sobic.010G100432 - -
13 Sobic.006G235650 - -
14 Sobic.005G161800 - -
15 Sobic.004G136800 - -
16 Sobic.002G216801 - -
17 Sobic.004G325300 transmembrane amino acid transporter protein, putative, expressed K15015: SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
18 Sobic.004G166301 - -
19 Sobic.003G164000 - -
20 Sobic.002G047100 - -


Gene co-expression network
sample Sobic003G090500 Sobic003G090500 Sobic002G017000 Sobic002G017000 Sobic003G090500--Sobic002G017000 Sobic002G007600 Sobic002G007600 Sobic003G090500--Sobic002G007600 Sobic008G167100 Sobic008G167100 Sobic003G090500--Sobic008G167100 Sobic005G162300 Sobic005G162300 Sobic003G090500--Sobic005G162300 Sobic002G023400 Sobic002G023400 Sobic003G090500--Sobic002G023400 Sobic002G120501 Sobic002G120501 Sobic003G090500--Sobic002G120501 Sobic006G085200 Sobic006G085200 Sobic003G090500--Sobic006G085200 Sobic002G017000--Sobic002G017000 Sobic002G017000--Sobic002G007600 Sobic002G017000--Sobic006G085200 Sobic002G017000--Sobic003G090500 Sobic004G136800 Sobic004G136800 Sobic002G017000--Sobic004G136800 Sobic002G017000--Sobic005G162300 Sobic002G216801 Sobic002G216801 Sobic002G017000--Sobic002G216801 Sobic005G161800 Sobic005G161800 Sobic002G017000--Sobic005G161800 Sobic002G007600--Sobic002G017000 Sobic002G007600--Sobic006G085200 Sobic002G007600--Sobic005G161800 Sobic002G007600--Sobic003G090500 Sobic005G218100 Sobic005G218100 Sobic002G007600--Sobic005G218100 Sobic002G007600--Sobic005G162300 Sobic002G007600--Sobic004G136800 Sobic008G167100--Sobic002G023400 Sobic008G167100--Sobic005G162300 Sobic007G104300 Sobic007G104300 Sobic008G167100--Sobic007G104300 Sobic002G144025 Sobic002G144025 Sobic008G167100--Sobic002G144025 Sobic008G049000 Sobic008G049000 Sobic008G167100--Sobic008G049000 Sobic004G166301 Sobic004G166301 Sobic008G167100--Sobic004G166301 Sobic008G167100--Sobic003G090500 Sobic008G167100--Sobic002G216801 Sobic003G219000 Sobic003G219000 Sobic008G167100--Sobic003G219000 Sobic005G162300--Sobic008G167100 Sobic005G162300--Sobic002G023400 Sobic005G162300--Sobic002G017000 Sobic005G162300--Sobic002G007600 Sobic005G162300--Sobic003G090500 Sobic005G162300--Sobic002G216801 Sobic005G162300--Sobic005G218100 Sobic002G023400--Sobic008G167100 Sobic002G023400--Sobic005G218100 Sobic002G023400--Sobic005G162300 Sobic002G023400--Sobic002G144025 Sobic002G023400--Sobic002G216801 Sobic002G023400--Sobic007G104300 Sobic001G166000 Sobic001G166000 Sobic002G023400--Sobic001G166000 Sobic010G161900 Sobic010G161900 Sobic002G023400--Sobic010G161900 Sobic002G023400--Sobic004G166301 Sobic010G100432 Sobic010G100432 Sobic002G120501--Sobic010G100432 Sobic006G235650 Sobic006G235650 Sobic002G120501--Sobic006G235650 Sobic002G120501--Sobic003G090500 Sobic002G120501--Sobic004G166301 Sobic002G128400 Sobic002G128400 Sobic002G120501--Sobic002G128400 Sobic006G099501 Sobic006G099501 Sobic002G120501--Sobic006G099501 Sobic002G120501--Sobic008G167100 Sobic010G112900 Sobic010G112900 Sobic002G120501--Sobic010G112900 Sobic002G120501--Sobic002G023400 Sobic006G085200--Sobic002G017000 Sobic006G085200--Sobic002G007600 Sobic006G085200--Sobic003G090500 Sobic006G085200--Sobic004G136800 Sobic006G085200--Sobic005G162300 Sobic006G085200--Sobic002G216801 Sobic006G085200--Sobic005G161800
Octagon: transcription factors


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