Gene annotation
Transcriptome id Sobic.003G106900.4,Sobic.003G106900.2,Sobic.003G106900.3
Synonym Sb03g008990
Functional annotation expressed protein
UniProt C5XF32
Pfam -
Panther DB PTHR33384 PTHR33384:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G68490 : -
RAP-DB (Rice) LOC_Os05g01210.1,LOC_Os05g01210.2 : expressed protein
MaizeGDB (Corn) Zm00025a023848 , Zm00025a035392
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G106900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G206600 class I glutamine amidotransferase, putative, expressed -
2 Sobic.003G339200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.010G271800 leucine zipper protein-like, putative, expressed -
4 Sobic.003G304300 expressed protein -
5 Sobic.004G344600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
6 Sobic.007G044201 - -
7 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
8 Sobic.001G112900 expressed protein -
9 Sobic.010G104700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
10 Sobic.001G172050 - -
11 Sobic.003G340300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
12 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
13 Sobic.010G113200 UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed -
14 Sobic.003G162400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
16 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
18 Sobic.007G065600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carotenoid synthesis regulator CarF, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
19 Sobic.001G018000 amine oxidase, flavin-containing, domain containing protein, expressed -
20 Sobic.004G153900 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase


Gene co-expression network
sample Sobic003G106900 Sobic003G106900 Sobic002G206600 Sobic002G206600 Sobic003G106900--Sobic002G206600 Sobic003G339200 Sobic003G339200 Sobic003G106900--Sobic003G339200 Sobic010G271800 Sobic010G271800 Sobic003G106900--Sobic010G271800 Sobic003G304300 Sobic003G304300 Sobic003G106900--Sobic003G304300 Sobic004G344600 Sobic004G344600 Sobic003G106900--Sobic004G344600 Sobic007G044201 Sobic007G044201 Sobic003G106900--Sobic007G044201 Sobic002G161400 Sobic002G161400 Sobic003G106900--Sobic002G161400 Sobic001G112900 Sobic001G112900 Sobic003G106900--Sobic001G112900 Sobic010G104700 Sobic010G104700 Sobic003G106900--Sobic010G104700 Sobic002G206600--Sobic007G044201 Sobic002G206600--Sobic003G106900 Sobic006G177400 Sobic006G177400 Sobic002G206600--Sobic006G177400 Sobic001G289000 Sobic001G289000 Sobic002G206600--Sobic001G289000 Sobic003G016700 Sobic003G016700 Sobic002G206600--Sobic003G016700 Sobic010G133500 Sobic010G133500 Sobic002G206600--Sobic010G133500 Sobic003G188900 Sobic003G188900 Sobic002G206600--Sobic003G188900 Sobic001G502300 Sobic001G502300 Sobic002G206600--Sobic001G502300 Sobic001G172050 Sobic001G172050 Sobic002G206600--Sobic001G172050 Sobic003G339200--Sobic001G112900 Sobic003G339200--Sobic004G344600 Sobic003G339200--Sobic002G161400 Sobic003G339200--Sobic003G304300 Sobic010G113200 Sobic010G113200 Sobic003G339200--Sobic010G113200 Sobic009G246400 Sobic009G246400 Sobic003G339200--Sobic009G246400 Sobic003G162400 Sobic003G162400 Sobic003G339200--Sobic003G162400 Sobic006G191500 Sobic006G191500 Sobic003G339200--Sobic006G191500 Sobic003G339200--Sobic010G104700 Sobic003G326000 Sobic003G326000 Sobic010G271800--Sobic003G326000 Sobic001G181100 Sobic001G181100 Sobic010G271800--Sobic001G181100 Sobic005G002400 Sobic005G002400 Sobic010G271800--Sobic005G002400 Sobic002G052100 Sobic002G052100 Sobic010G271800--Sobic002G052100 Sobic004G214800 Sobic004G214800 Sobic010G271800--Sobic004G214800 Sobic008G002400 Sobic008G002400 Sobic010G271800--Sobic008G002400 Sobic006G154800 Sobic006G154800 Sobic010G271800--Sobic006G154800 Sobic004G190100 Sobic004G190100 Sobic010G271800--Sobic004G190100 Sobic010G271800--Sobic001G112900 Sobic004G267700 Sobic004G267700 Sobic003G304300--Sobic004G267700 Sobic003G304300--Sobic006G191500 Sobic002G351200 Sobic002G351200 Sobic003G304300--Sobic002G351200 Sobic003G304300--Sobic002G161400 Sobic003G304300--Sobic004G344600 Sobic003G304300--Sobic001G112900 Sobic003G186800 Sobic003G186800 Sobic003G304300--Sobic003G186800 Sobic003G380200 Sobic003G380200 Sobic003G304300--Sobic003G380200 Sobic004G268400 Sobic004G268400 Sobic003G304300--Sobic004G268400 Sobic004G344600--Sobic002G161400 Sobic004G344600--Sobic001G112900 Sobic004G344600--Sobic003G339200 Sobic004G344600--Sobic003G304300 Sobic004G344600--Sobic006G191500 Sobic004G344600--Sobic010G104700 Sobic001G485100 Sobic001G485100 Sobic004G344600--Sobic001G485100 Sobic004G128900 Sobic004G128900 Sobic004G344600--Sobic004G128900 Sobic004G344600--Sobic009G246400 Sobic007G044201--Sobic002G206600 Sobic007G044201--Sobic001G289000 Sobic007G044201--Sobic001G172050 Sobic007G044201--Sobic001G502300 Sobic007G044201--Sobic010G133500 Sobic007G044201--Sobic003G106900 Sobic007G044201--Sobic003G016700 Sobic006G262001 Sobic006G262001 Sobic007G044201--Sobic006G262001 Sobic002G302400 Sobic002G302400 Sobic007G044201--Sobic002G302400 Sobic002G161400--Sobic006G191500 Sobic002G161400--Sobic004G344600 Sobic002G161400--Sobic004G128900 Sobic002G161400--Sobic003G304300 Sobic002G161400--Sobic001G485100 Sobic004G153900 Sobic004G153900 Sobic002G161400--Sobic004G153900 Sobic002G161400--Sobic003G339200 Sobic002G161400--Sobic003G380200 Sobic002G161400--Sobic001G112900 Sobic001G112900--Sobic003G339200 Sobic001G112900--Sobic004G344600 Sobic001G112900--Sobic003G304300 Sobic001G112900--Sobic002G161400 Sobic001G112900--Sobic010G113200 Sobic001G112900--Sobic005G002400 Sobic001G112900--Sobic006G191500 Sobic001G112900--Sobic003G162400 Sobic001G112900--Sobic010G104700 Sobic001G046000 Sobic001G046000 Sobic010G104700--Sobic001G046000 Sobic010G104700--Sobic003G304300 Sobic010G101000 Sobic010G101000 Sobic010G104700--Sobic010G101000 Sobic010G104700--Sobic004G344600 Sobic010G104700--Sobic004G153900 Sobic009G225600 Sobic009G225600 Sobic010G104700--Sobic009G225600 Sobic010G104700--Sobic002G161400 Sobic008G180800 Sobic008G180800 Sobic010G104700--Sobic008G180800 Sobic010G104700--Sobic002G351200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.