Gene annotation
| Transcriptome id | Sobic.003G263600.1 |
|---|---|
| Synonym | CHIA, ATCHIA, Sb03g031710 |
| Functional annotation | glycosyl hydrolase, putative, expressed |
| UniProt | C5XGW3 |
| Pfam | PF00704 |
| Panther DB | PTHR11177 PTHR11177:SF161 |
| NCBI CDD | - |
| KEGG Orthology | K01183; chitinase |
| Gene Ontology | GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds |
Orthologs (automatic annotation)
| TAIR | AT5G24090 : chitinase A |
|---|---|
| RAP-DB (Rice) | LOC_Os01g64110.1 : glycosyl hydrolase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a030311 , Zm00025a026759 , Zm00025a026760 |
| Brachypodium | KQK09284 , KQK09026 , PNT72617 , KQK10704 , PNT72403 , KQK10702 |
| Barley | HORVU3Hr1G084220.1 , HORVU3Hr1G084250.1 , HORVU3Hr1G084220.2 , HORVU3Hr1G084220.3 , HORVU3Hr1G087870.1 , HORVU3Hr1G064200.2 , HORVU3Hr1G064200.1 , HORVU3Hr1G064200.3 , HORVU3Hr1G054970.1 , HORVU3Hr1G083670.2 |
| Wheat | TraesCS3B02G408600 , TraesCS3B02G294900 , TraesCS3D02G261700 , TraesCS3A02G261700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G284600 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR39 - Auxin-responsive SAUR gene family member, expressed | - |
| 2 | Sobic.009G237350 | - | - |
| 3 | Sobic.003G091850 | - | - |
| 4 | Sobic.008G178200 | NBS-LRR disease resistance protein, putative, expressed | - |
| 5 | Sobic.008G091500 | flavonol synthase/flavanone 3-hydroxylase, putative, expressed | - |
| 6 | Sobic.009G066100 | UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed | - |
| 7 | Sobic.005G108300 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed | K14506: jasmonic acid-amino synthetase |
| 8 | Sobic.008G178300 | NBS-LRR disease resistance protein, putative, expressed | - |
| 9 | Sobic.009G180100 | LTPL61 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed | - |
| 10 | Sobic.001G174500 | GRAS family transcription factor containing protein, expressed | - |
| 11 | Sobic.003G257800 | - | - |
| 12 | Sobic.006G249000 | cysteine-rich receptor-like protein kinase 8 precursor, putative, expressed | K04733: interleukin-1 receptor-associated kinase 4 |
| 13 | Sobic.005G130100 | terpene synthase, putative, expressed | K15803: (-)-germacrene D synthase |
| 14 | Sobic.002G054901 | - | - |
| 15 | Sobic.010G056100 | HIRAN domain containing protein, putative, expressed | K15363: FAN1, fanconi-associated nuclease 1 |
| 16 | Sobic.004G345900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed | - |
| 17 | Sobic.006G141100 | OsFBO6 - F-box and other domain containing protein, expressed | - |
| 18 | Sobic.003G395600 | CorA-like magnesium transporter protein, putative, expressed | K16075: MRS2, magnesium transporter |
| 19 | Sobic.010G063433 | - | - |
| 20 | Sobic.005G003200 | sugar-responsive gene(PubMedID : 25496467)@asparagine synthetase, putative, expressed | K01953: asnB, asparagine synthase (glutamine-hydrolysing) |
Gene co-expression network
Octagon: transcription factors
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