Gene annotation
| Transcriptome id | Sobic.003G277700.1 |
|---|---|
| Synonym | Sb03g032950 |
| Functional annotation | phosphotransferase, putative, expressed |
| UniProt | C5XIB4 |
| Pfam | PF01636 |
| Panther DB | PTHR22603 PTHR22603:SF34 |
| NCBI CDD | KOG2686; Choline kinase |
| KEGG Orthology | K14156; choline/ethanolamine kinase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G74320 : Protein kinase superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g51920.1 : phosphotransferase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a044351 , Zm00025a027780 |
| Brachypodium | PNT72714 , KQK09486 , KQK05205 |
| Barley | HORVU6Hr1G056510.2 , HORVU3Hr1G010410.1 , HORVU6Hr1G039850.1 , HORVU3Hr1G067860.1 , HORVU3Hr1G067860.2 , HORVU3Hr1G067860.3 , HORVU3Hr1G067860.4 , HORVU6Hr1G056530.1 , HORVU3Hr1G067830.1 , HORVU6Hr1G056510.1 , HORVU4Hr1G081820.1 , HORVU2Hr1G104680.1 |
| Wheat | TraesCS1B02G373100 , TraesCS3A02G244600 , TraesCS3B02G275400 , TraesCS1D02G361000 , TraesCS1A02G356900 , TraesCS3D02G246800 |
| Populus | - |
JBrowse
| Sobic.003G277700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G152200 | OsFBT7 - F-box and tubby domain containing protein, expressed | - |
| 2 | Sobic.002G330300 | chitin-inducible gibberellin-responsive protein, putative, expressed | - |
| 3 | Sobic.001G283500 | VHS and GAT domain containing protein, expressed | - |
| 4 | Sobic.001G434900 | serine palmitoyltransferase 1, putative, expressed | K00654: serine palmitoyltransferase |
| 5 | Sobic.002G119800 | arginyl-tRNA synthetase, putative, expressed | - |
| 6 | Sobic.001G516100 | protein kinase family protein, putative, expressed | K14500: BR-signaling kinase |
| 7 | Sobic.003G367300 | actin, putative, expressed | K10355: actin, other eukaryote |
| 8 | Sobic.010G068500 | cyclic nucleotide-gated ion channel 14, putative, expressed | K05391: cyclic nucleotide gated channel, plant |
| 9 | Sobic.008G016900 | glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed | K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing) |
| 10 | Sobic.006G225600 | protein phosphatase 2C, putative, expressed | K17506: PPM1L, protein phosphatase 1L |
| 11 | Sobic.002G292600 | phytoene synthase(PubMedID : 22672222)@carotenoid biosynthesi(PubMedID : 18162592)@PSY3 expression influences root carotenogenesis and defines a potential bottleneck upstream of NCED(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed | K02291: 15-cis-phytoene synthase |
| 12 | Sobic.009G230700 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 13 | Sobic.010G052800 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed | - |
| 14 | Sobic.004G234900 | membrane-anchored ubiquitin-fold protein, putative, expressed | - |
| 15 | Sobic.010G228000 | Protein kinase domain containing protein, expressed | - |
| 16 | Sobic.001G433400 | Zinc finger, C3HC4 type domain containing protein, expressed | - |
| 17 | Sobic.001G138300 | zinc finger, C3HC4 type domain containing protein, expressed | K10666: E3 ubiquitin-protein ligase RNF5 |
| 18 | Sobic.006G218700 | tyrosine protein kinase domain containing protein, putative, expressed | - |
| 19 | Sobic.001G078500 | expressed protein | - |
| 20 | Sobic.003G007500 | CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed | - |
Gene co-expression network
Octagon: transcription factors
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