Gene annotation
Transcriptome id Sobic.003G385900.1
Synonym ATLOX1, LOX1, Sb03g042450
Functional annotation lipoxygenase, putative, expressed
UniProt C5XES7
Pfam PF01477 PF00305
Panther DB PTHR11771 PTHR11771:SF54
NCBI CDD -
KEGG Orthology K15718; linoleate 9S-lipoxygenase
Gene Ontology GO:0005515; protein binding GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen


Orthologs (automatic annotation)
TAIR AT1G55020 : lipoxygenase 1
RAP-DB (Rice) LOC_Os03g52860.1 : lipoxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a005096 , Zm00025a026458 , Zm00025a007722 , Zm00025a026461 , Zm00025a007723 , Zm00025a007727 , Zm00025a007726 , Zm00025a017057
Brachypodium PNT74274 , KQK13306 , KQK13307 , KQJ93839 , KQK13662
Barley HORVU5Hr1G054200.1 , HORVU5Hr1G001180.8 , HORVU5Hr1G001180.1 , HORVU5Hr1G001180.3 , HORVU5Hr1G001180.2 , HORVU5Hr1G001180.5 , HORVU5Hr1G001180.7 , HORVU5Hr1G001180.6 , HORVU5Hr1G093770.11 , HORVU5Hr1G093770.10 , HORVU5Hr1G093770.13 , HORVU5Hr1G093770.12 , HORVU4Hr1G005920.15 , HORVU4Hr1G005920.16 , HORVU4Hr1G005920.17 , HORVU4Hr1G005920.18 , HORVU4Hr1G005920.19 , HORVU5Hr1G093700.18 , HORVU5Hr1G093700.19 , HORVU5Hr1G093700.16 , HORVU5Hr1G093700.17 , HORVU5Hr1G093700.14 , HORVU5Hr1G093700.15 , HORVU5Hr1G093700.12 , HORVU5Hr1G093700.13 , HORVU5Hr1G093700.10 , HORVU5Hr1G093700.11 , HORVU4Hr1G005920.29 , HORVU4Hr1G005920.21 , HORVU4Hr1G005920.20 , HORVU4Hr1G005920.23 , HORVU4Hr1G005920.22 , HORVU4Hr1G005920.25 , HORVU4Hr1G005920.24 , HORVU4Hr1G005920.27 , HORVU4Hr1G005920.26 , HORVU4Hr1G005920.38 , HORVU4Hr1G005920.39 , HORVU4Hr1G005920.36 , HORVU4Hr1G005920.37 , HORVU4Hr1G005920.34 , HORVU4Hr1G005920.35 , HORVU4Hr1G005920.32 , HORVU4Hr1G005920.33 , HORVU4Hr1G005920.30 , HORVU4Hr1G005920.31 , HORVU5Hr1G093770.9 , HORVU5Hr1G093770.8 , HORVU5Hr1G093770.5 , HORVU5Hr1G093700.5 , HORVU5Hr1G093770.7 , HORVU5Hr1G093770.6 , HORVU5Hr1G093770.3 , HORVU5Hr1G093770.2 , HORVU4Hr1G005920.49 , HORVU4Hr1G005920.48 , HORVU4Hr1G005920.43 , HORVU4Hr1G005920.42 , HORVU4Hr1G005920.41 , HORVU4Hr1G005920.40 , HORVU4Hr1G005920.47 , HORVU4Hr1G005920.46 , HORVU4Hr1G005920.45 , HORVU4Hr1G005920.44 , HORVU5Hr1G093700.8 , HORVU5Hr1G093700.9 , HORVU5Hr1G093700.4 , HORVU5Hr1G093770.4 , HORVU5Hr1G093700.6 , HORVU5Hr1G093700.7 , HORVU5Hr1G093770.1 , HORVU5Hr1G093700.1 , HORVU5Hr1G093700.2 , HORVU5Hr1G093700.3 , HORVU5Hr1G117110.2 , HORVU5Hr1G117110.1 , HORVU5Hr1G001180.11 , HORVU4Hr1G005920.58 , HORVU4Hr1G005920.59 , HORVU4Hr1G005920.50 , HORVU4Hr1G005920.51 , HORVU4Hr1G005920.52 , HORVU4Hr1G005920.53 , HORVU4Hr1G005920.54 , HORVU4Hr1G005920.55 , HORVU4Hr1G005920.56 , HORVU4Hr1G005920.57 , HORVU4Hr1G005920.8 , HORVU5Hr1G093700.24 , HORVU5Hr1G093700.23 , HORVU5Hr1G093700.22 , HORVU5Hr1G093700.21 , HORVU5Hr1G093700.20 , HORVU4Hr1G005920.65 , HORVU4Hr1G005920.64 , HORVU4Hr1G005920.61 , HORVU4Hr1G005920.60 , HORVU4Hr1G005920.63 , HORVU4Hr1G005920.62
Wheat TraesCS6A02G166000 , TraesCS5A02G378900 , TraesCS5D02G388700 , TraesCS5D02G388800 , TraesCS5D02G388800 , TraesCS5A02G007900 , TraesCS5B02G382400 , TraesCS4B02G037900 , TraesCS4B02G037900 , TraesCS5B02G382600 , TraesCS6D02G121900 , TraesCS4D02G035200 , TraesCS5D02G513100 , TraesCS5B02G006500 , TraesCS4A02G359800 , TraesCS4A02G359800 , TraesCS5A02G378800 , TraesCS5A02G378800 , TraesCS5A02G378700 , TraesCS5A02G379000 , TraesCS6A02G132500 , TraesCS6B02G193400 , TraesCS6D02G154600 , TraesCS6A02G132200 , TraesCS6B02G160400 , TraesCS5B02G382300 , TraesCS4B02G037700 , TraesCS4B02G037700 , TraesCS4B02G037700
Populus -


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cDNA sequences
Sobic.003G385900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G115000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@limonoid UDP-glucosyltransferase, putative, expressed -
2 Sobic.006G171300 expansin precursor, putative, expressed -
3 Sobic.007G094100 OsWAK108 - OsWAK receptor-like protein kinase, expressed -
4 Sobic.003G269900 OsSub12 - Putative Subtilisin homologue, expressed -
5 Sobic.010G174100 expressed protein -
6 Sobic.009G096300 ATOFP17/OFP17, putative, expressed -
7 Sobic.002G391200 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.005G216500 plant protein of unknown function domain containing protein, expressed -
9 Sobic.004G323000 SCP-like extracellular protein, expressed -
10 Sobic.004G009300 expressed protein -
11 Sobic.010G139100 serine/threonine-protein kinase, putative, expressed -
12 Sobic.001G173700 universal stress protein domain containing protein, putative, expressed -
13 Sobic.004G008600 receptor protein kinase CLAVATA1 precursor, putative, expressed -
14 Sobic.002G082700 DUF567 domain containing protein, putative, expressed -
15 Sobic.001G301400 expansin precursor, putative, expressed -
16 Sobic.003G046700 expressed protein -
17 Sobic.003G185300 dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
18 Sobic.008G084900 D-mannose binding lectin family protein, expressed -
19 Sobic.004G126500 - -
20 Sobic.010G269000 bZIP transcription factor domain containing protein, expressed -


Gene co-expression network
sample Sobic003G385900 Sobic003G385900 Sobic010G115000 Sobic010G115000 Sobic003G385900--Sobic010G115000 Sobic006G171300 Sobic006G171300 Sobic003G385900--Sobic006G171300 Sobic007G094100 Sobic007G094100 Sobic003G385900--Sobic007G094100 Sobic003G269900 Sobic003G269900 Sobic003G385900--Sobic003G269900 Sobic010G174100 Sobic010G174100 Sobic003G385900--Sobic010G174100 Sobic009G096300 Sobic009G096300 Sobic003G385900--Sobic009G096300 Sobic002G391200 Sobic002G391200 Sobic003G385900--Sobic002G391200 Sobic005G216500 Sobic005G216500 Sobic003G385900--Sobic005G216500 Sobic004G323000 Sobic004G323000 Sobic003G385900--Sobic004G323000 Sobic010G115000--Sobic007G094100 Sobic010G115000--Sobic003G269900 Sobic010G115000--Sobic005G216500 Sobic003G046700 Sobic003G046700 Sobic010G115000--Sobic003G046700 Sobic004G008600 Sobic004G008600 Sobic010G115000--Sobic004G008600 Sobic010G115000--Sobic006G171300 Sobic010G139100 Sobic010G139100 Sobic010G115000--Sobic010G139100 Sobic010G269000 Sobic010G269000 Sobic010G115000--Sobic010G269000 Sobic008G084900 Sobic008G084900 Sobic010G115000--Sobic008G084900 Sobic006G171300--Sobic007G094100 Sobic006G171300--Sobic010G174100 Sobic006G171300--Sobic010G115000 Sobic006G171300--Sobic009G096300 Sobic004G009300 Sobic004G009300 Sobic006G171300--Sobic004G009300 Sobic006G171300--Sobic003G269900 Sobic006G171300--Sobic010G139100 Sobic002G392300 Sobic002G392300 Sobic006G171300--Sobic002G392300 Sobic006G171300--Sobic002G391200 Sobic007G094100--Sobic010G115000 Sobic007G094100--Sobic005G216500 Sobic007G094100--Sobic004G008600 Sobic007G094100--Sobic010G269000 Sobic007G094100--Sobic004G009300 Sobic007G094100--Sobic003G046700 Sobic007G094100--Sobic006G171300 Sobic009G018300 Sobic009G018300 Sobic007G094100--Sobic009G018300 Sobic005G120900 Sobic005G120900 Sobic007G094100--Sobic005G120900 Sobic002G118900 Sobic002G118900 Sobic003G269900--Sobic002G118900 Sobic003G269900--Sobic010G115000 Sobic003G269900--Sobic010G139100 Sobic009G032900 Sobic009G032900 Sobic003G269900--Sobic009G032900 Sobic003G269900--Sobic005G216500 Sobic002G115600 Sobic002G115600 Sobic003G269900--Sobic002G115600 Sobic010G158400 Sobic010G158400 Sobic003G269900--Sobic010G158400 Sobic005G216700 Sobic005G216700 Sobic003G269900--Sobic005G216700 Sobic003G185300 Sobic003G185300 Sobic003G269900--Sobic003G185300 Sobic010G174100--Sobic009G096300 Sobic010G174100--Sobic004G323000 Sobic010G174100--Sobic006G171300 Sobic010G174100--Sobic002G391200 Sobic010G174100--Sobic010G139100 Sobic001G301400 Sobic001G301400 Sobic010G174100--Sobic001G301400 Sobic010G021700 Sobic010G021700 Sobic010G174100--Sobic010G021700 Sobic010G174100--Sobic010G115000 Sobic005G161200 Sobic005G161200 Sobic010G174100--Sobic005G161200 Sobic009G096300--Sobic010G174100 Sobic009G096300--Sobic002G391200 Sobic009G096300--Sobic006G171300 Sobic009G096300--Sobic001G301400 Sobic009G096300--Sobic010G021700 Sobic009G096300--Sobic004G323000 Sobic002G307900 Sobic002G307900 Sobic009G096300--Sobic002G307900 Sobic009G096300--Sobic010G115000 Sobic002G082700 Sobic002G082700 Sobic009G096300--Sobic002G082700 Sobic002G391200--Sobic010G021700 Sobic002G391200--Sobic001G301400 Sobic002G391200--Sobic002G307900 Sobic002G391200--Sobic009G096300 Sobic001G464300 Sobic001G464300 Sobic002G391200--Sobic001G464300 Sobic002G391200--Sobic010G174100 Sobic002G391200--Sobic002G082700 Sobic002G391200--Sobic010G115000 Sobic002G391200--Sobic010G139100 Sobic005G216500--Sobic004G008600 Sobic005G216500--Sobic010G269000 Sobic005G216500--Sobic003G046700 Sobic005G134200 Sobic005G134200 Sobic005G216500--Sobic005G134200 Sobic005G216500--Sobic008G084900 Sobic007G220400 Sobic007G220400 Sobic005G216500--Sobic007G220400 Sobic005G216500--Sobic002G115600 Sobic005G216500--Sobic007G094100 Sobic005G216500--Sobic010G115000 Sobic004G323000--Sobic010G174100 Sobic004G323000--Sobic005G161200 Sobic004G323000--Sobic010G139100 Sobic001G314100 Sobic001G314100 Sobic004G323000--Sobic001G314100 Sobic004G323000--Sobic009G096300 Sobic004G323000--Sobic001G301400 Sobic008G158266 Sobic008G158266 Sobic004G323000--Sobic008G158266 Sobic004G323000--Sobic010G021700 Sobic004G323000--Sobic002G391200
Octagon: transcription factors


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