Gene annotation
Transcriptome id Sobic.004G053600.4,Sobic.004G053600.2,Sobic.004G053600.5,Sobic.004G053600.1,Sobic.004G053600.6,Sobic.004G053600.3
Synonym Sb04g004550, UREF
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
urease accessory protein F, putative, expressed
UniProt C5XVJ2 , A0A1Z5RL17
Pfam PF01730
Panther DB PTHR33620 PTHR33620:SF1
NCBI CDD -
KEGG Orthology K03188; urease accessory protein
Gene Ontology GO:0016151; nickel cation binding GO:0006807nitrogen compound metabolic process


Orthologs (automatic annotation)
TAIR AT1G21840 : urease accessory protein F
RAP-DB (Rice) LOC_Os02g07150.1 : urease accessory protein F, putative, expressed
MaizeGDB (Corn) Zm00025a019060
Brachypodium KQJ93509 , PNT65968
Barley HORVU6Hr1G027660.7 , HORVU6Hr1G027660.6 , HORVU6Hr1G027660.5 , HORVU6Hr1G027660.4 , HORVU6Hr1G027660.2 , HORVU6Hr1G027660.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G046600 - -
2 Sobic.004G165600 glycosyl hydrolases family 17, putative, expressed -
3 Sobic.004G190800 galactosyltransferase family protein, putative, expressed K14413: beta-1,3-galactosyltransferase
4 Sobic.002G013600 expressed protein -
5 Sobic.002G413700 expressed protein K16275: BAH, E3 ubiquitin-protein ligase BAH
6 Sobic.009G252500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial chaperone BCS1, putative, expressed K08900: mitochondrial chaperone BCS1
7 Sobic.005G096201 - -
8 Sobic.002G209450 - -
9 Sobic.003G241600 - -
10 Sobic.010G261500 acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
11 Sobic.001G010900 OsGrx_S14 - glutaredoxin subgroup II, expressed K07390: grxD, monothiol glutaredoxin
12 Sobic.002G231400 - -
13 Sobic.003G298000 - -
14 Sobic.001G494400 DUF593 domain containing protein, expressed -
15 Sobic.009G252600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial chaperone BCS1, putative, expressed K08900: mitochondrial chaperone BCS1
16 Sobic.007G089566 - -
17 Sobic.007G061500 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
18 Sobic.001G018550 - -
19 Sobic.002G346250 - -
20 Sobic.004G314100 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659890)@expressed protein -


Gene co-expression network
sample Sobic004G053600 Sobic004G053600 Sobic007G046600 Sobic007G046600 Sobic004G053600--Sobic007G046600 Sobic004G165600 Sobic004G165600 Sobic004G053600--Sobic004G165600 Sobic004G190800 Sobic004G190800 Sobic004G053600--Sobic004G190800 Sobic002G013600 Sobic002G013600 Sobic004G053600--Sobic002G013600 Sobic002G413700 Sobic002G413700 Sobic004G053600--Sobic002G413700 Sobic009G252500 Sobic009G252500 Sobic004G053600--Sobic009G252500 Sobic005G096201 Sobic005G096201 Sobic004G053600--Sobic005G096201 Sobic002G209450 Sobic002G209450 Sobic004G053600--Sobic002G209450 Sobic003G241600 Sobic003G241600 Sobic004G053600--Sobic003G241600 Sobic007G046600--Sobic009G252500 Sobic003G298000 Sobic003G298000 Sobic007G046600--Sobic003G298000 Sobic007G046600--Sobic002G209450 Sobic007G046600--Sobic003G241600 Sobic008G170800 Sobic008G170800 Sobic007G046600--Sobic008G170800 Sobic007G046600--Sobic004G053600 Sobic003G155000 Sobic003G155000 Sobic007G046600--Sobic003G155000 Sobic007G046600--Sobic004G190800 Sobic001G010900 Sobic001G010900 Sobic007G046600--Sobic001G010900 Sobic004G342600 Sobic004G342600 Sobic004G165600--Sobic004G342600 Sobic006G152900 Sobic006G152900 Sobic004G165600--Sobic006G152900 Sobic004G165600--Sobic002G013600 Sobic010G150000 Sobic010G150000 Sobic004G165600--Sobic010G150000 Sobic004G165600--Sobic005G096201 Sobic004G165600--Sobic004G053600 Sobic002G038200 Sobic002G038200 Sobic004G165600--Sobic002G038200 Sobic004G165600--Sobic007G046600 Sobic001G494400 Sobic001G494400 Sobic004G165600--Sobic001G494400 Sobic004G190800--Sobic002G013600 Sobic001G312801 Sobic001G312801 Sobic004G190800--Sobic001G312801 Sobic009G049100 Sobic009G049100 Sobic004G190800--Sobic009G049100 Sobic002G360701 Sobic002G360701 Sobic004G190800--Sobic002G360701 Sobic007G061500 Sobic007G061500 Sobic004G190800--Sobic007G061500 Sobic001G350800 Sobic001G350800 Sobic004G190800--Sobic001G350800 Sobic004G314100 Sobic004G314100 Sobic004G190800--Sobic004G314100 Sobic004G288900 Sobic004G288900 Sobic004G190800--Sobic004G288900 Sobic002G346250 Sobic002G346250 Sobic004G190800--Sobic002G346250 Sobic002G013600--Sobic004G190800 Sobic004G224100 Sobic004G224100 Sobic002G013600--Sobic004G224100 Sobic002G013600--Sobic005G096201 Sobic003G139100 Sobic003G139100 Sobic002G013600--Sobic003G139100 Sobic002G013600--Sobic004G165600 Sobic002G013600--Sobic001G494400 Sobic002G013600--Sobic007G061500 Sobic002G013600--Sobic002G346250 Sobic002G013600--Sobic003G241600 Sobic002G413700--Sobic002G209450 Sobic007G089566 Sobic007G089566 Sobic002G413700--Sobic007G089566 Sobic008G143901 Sobic008G143901 Sobic002G413700--Sobic008G143901 Sobic004G118000 Sobic004G118000 Sobic002G413700--Sobic004G118000 Sobic006G021100 Sobic006G021100 Sobic002G413700--Sobic006G021100 Sobic002G413700--Sobic004G053600 Sobic002G231400 Sobic002G231400 Sobic002G413700--Sobic002G231400 Sobic001G483001 Sobic001G483001 Sobic002G413700--Sobic001G483001 Sobic008G190600 Sobic008G190600 Sobic002G413700--Sobic008G190600 Sobic009G252500--Sobic007G046600 Sobic009G252500--Sobic003G298000 Sobic009G252500--Sobic002G209450 Sobic009G252500--Sobic003G241600 Sobic009G252500--Sobic004G190800 Sobic009G252500--Sobic009G049100 Sobic010G261500 Sobic010G261500 Sobic009G252500--Sobic010G261500 Sobic009G252500--Sobic001G494400 Sobic009G252500--Sobic008G170800 Sobic005G096201--Sobic002G209450 Sobic005G096201--Sobic004G224100 Sobic005G096201--Sobic002G013600 Sobic005G096201--Sobic003G139100 Sobic005G096201--Sobic010G150000 Sobic005G096201--Sobic002G231400 Sobic005G096201--Sobic004G165600 Sobic005G096201--Sobic001G494400 Sobic003G429600 Sobic003G429600 Sobic005G096201--Sobic003G429600 Sobic002G209450--Sobic005G096201 Sobic002G209450--Sobic009G252500 Sobic003G253700 Sobic003G253700 Sobic002G209450--Sobic003G253700 Sobic002G209450--Sobic003G298000 Sobic002G209450--Sobic007G046600 Sobic002G209450--Sobic003G155000 Sobic001G520000 Sobic001G520000 Sobic002G209450--Sobic001G520000 Sobic002G209450--Sobic001G494400 Sobic001G191500 Sobic001G191500 Sobic002G209450--Sobic001G191500 Sobic003G241600--Sobic002G231400 Sobic001G018550 Sobic001G018550 Sobic003G241600--Sobic001G018550 Sobic003G241600--Sobic009G252500 Sobic003G241600--Sobic007G046600 Sobic003G241600--Sobic003G429600 Sobic003G241600--Sobic002G013600 Sobic003G241600--Sobic004G288900 Sobic003G305250 Sobic003G305250 Sobic003G241600--Sobic003G305250 Sobic003G241600--Sobic005G096201
Octagon: transcription factors


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