Gene annotation
Transcriptome id Sobic.004G224000.2
Synonym Sb04g026840, YSL7
Functional annotation -
UniProt A0A1Z5RNM6
Pfam PF03169
Panther DB PTHR31645 PTHR31645:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65730 : YELLOW STRIPE like 7
RAP-DB (Rice) LOC_Os02g42220.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a032072 , Zm00025a021051 , Zm00025a010612 , Zm00025a010614 , Zm00025a056642 , Zm00025a003433 , Zm00025a056538 , Zm00025a006572 , Zm00025a056537
Brachypodium KQJ82291 , KQJ82292 , KQK00455 , KQJ83669 , KQJ83668 , PNT69110 , PNT61516 , KQJ85264 , KQJ83671 , PNT60923
Barley HORVU2Hr1G120250.1 , HORVU2Hr1G120250.2 , HORVU2Hr1G090280.20 , HORVU2Hr1G090280.21 , HORVU2Hr1G090280.9 , HORVU2Hr1G090280.7 , HORVU2Hr1G090280.6 , HORVU2Hr1G090280.5 , HORVU2Hr1G090280.4 , HORVU6Hr1G059420.4 , HORVU6Hr1G059420.5 , HORVU6Hr1G059420.1 , HORVU6Hr1G059420.2 , HORVU6Hr1G059420.3 , HORVU2Hr1G070320.1 , HORVU2Hr1G070320.7 , HORVU2Hr1G070320.4 , HORVU2Hr1G070320.5 , HORVU2Hr1G070320.18 , HORVU2Hr1G070320.19 , HORVU2Hr1G090240.1 , HORVU2Hr1G090380.8 , HORVU2Hr1G090380.2 , HORVU2Hr1G090380.3 , HORVU2Hr1G090380.1 , HORVU2Hr1G090380.6 , HORVU2Hr1G090380.7 , HORVU2Hr1G090380.4 , HORVU2Hr1G090380.5 , HORVU2Hr1G070320.23 , HORVU2Hr1G070320.22 , HORVU2Hr1G099860.1 , HORVU2Hr1G099860.2 , HORVU2Hr1G099860.3 , HORVU2Hr1G070320.26 , HORVU2Hr1G070300.1 , HORVU2Hr1G070300.2 , HORVU6Hr1G008970.1 , HORVU6Hr1G008970.2 , HORVU6Hr1G008970.3 , HORVU2Hr1G090280.17 , HORVU2Hr1G090280.16 , HORVU2Hr1G090280.15 , HORVU2Hr1G090280.14 , HORVU2Hr1G090280.13 , HORVU2Hr1G090280.12 , HORVU2Hr1G090280.11 , HORVU2Hr1G090280.10 , HORVU2Hr1G090280.19 , HORVU2Hr1G090280.18 , HORVU2Hr1G090240.3 , HORVU2Hr1G070320.10 , HORVU2Hr1G070320.11 , HORVU2Hr1G090310.5 , HORVU2Hr1G070320.12 , HORVU2Hr1G090310.4 , HORVU2Hr1G090310.1 , HORVU2Hr1G090310.3 , HORVU2Hr1G090310.2 , HORVU2Hr1G090240.2 , HORVU2Hr1G090310.6
Wheat TraesCS2D02G283400 , TraesCS2D02G484200 , TraesCS2D02G484200 , TraesCS6D02G214100 , TraesCS2A02G390800 , TraesCS2B02G408500 , TraesCS2D02G373800 , TraesCS2B02G393600 , TraesCS2D02G554800 , TraesCS2A02G484200 , TraesCS2A02G484200 , TraesCS2D02G387800 , TraesCS6A02G220900 , TraesCS2A02G284900 , TraesCS2B02G097600 , TraesCS6D02G214300 , TraesCS6B02G262400 , TraesCS2B02G394500 , TraesCS2A02G376700 , TraesCS2D02G373900 , TraesCS2B02G302000 , TraesCS2A02G284700 , TraesCS6A02G221100 , TraesCS2D02G374000 , TraesCS2B02G301800 , TraesCS2D02G081000 , TraesCS2A02G083400 , TraesCS2B02G097400 , TraesCS2B02G097400 , TraesCS6A02G043100 , TraesCS2A02G377600 , TraesCS2A02G377200 , TraesCS2D02G283600 , TraesCS2B02G394400 , TraesCS2B02G394600 , TraesCS2D02G387800 , TraesCS2D02G373100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G149400 lipase, putative, expressed -
2 Sobic.008G065700 RNA recognition motif containing protein, expressed -
3 Sobic.009G122000 Annexin arabidopsis 3(PubMedID : 26320239)@annexin, putative, expressed -
4 Sobic.001G424650 - -
5 Sobic.005G110553 - -
6 Sobic.010G249600 macrophage migration inhibitory factor, putative, expressed -
7 Sobic.001G492400 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
8 Sobic.001G503700 DUF677 domain containing protein, putative, expressed -
9 Sobic.006G118150 - -
10 Sobic.007G226000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
11 Sobic.007G010400 - -
12 Sobic.002G398600 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
13 Sobic.001G367900 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@annexin, putative, expressed -
14 Sobic.009G088300 SHR5-receptor-like kinase, putative, expressed -
15 Sobic.001G466300 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
16 Sobic.004G173200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
17 Sobic.007G077466 - -
18 Sobic.008G016400 - -
19 Sobic.007G210200 Highest expression level in seeds(PubMedID : 27501690)@OsSPL14 - SBP-box gene family member, expressed -
20 Sobic.003G225200 CAMK_CAMK_like.9 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase


Gene co-expression network
sample Sobic004G224000 Sobic004G224000 Sobic003G149400 Sobic003G149400 Sobic004G224000--Sobic003G149400 Sobic008G065700 Sobic008G065700 Sobic004G224000--Sobic008G065700 Sobic009G122000 Sobic009G122000 Sobic004G224000--Sobic009G122000 Sobic001G424650 Sobic001G424650 Sobic004G224000--Sobic001G424650 Sobic005G110553 Sobic005G110553 Sobic004G224000--Sobic005G110553 Sobic010G249600 Sobic010G249600 Sobic004G224000--Sobic010G249600 Sobic001G492400 Sobic001G492400 Sobic004G224000--Sobic001G492400 Sobic001G503700 Sobic001G503700 Sobic004G224000--Sobic001G503700 Sobic006G118150 Sobic006G118150 Sobic004G224000--Sobic006G118150 Sobic003G149400--Sobic004G224000 Sobic007G010400 Sobic007G010400 Sobic003G149400--Sobic007G010400 Sobic003G149400--Sobic008G065700 Sobic003G149400--Sobic009G122000 Sobic003G149400--Sobic005G110553 Sobic003G149400--Sobic001G503700 Sobic001G367900 Sobic001G367900 Sobic003G149400--Sobic001G367900 Sobic002G001500 Sobic002G001500 Sobic003G149400--Sobic002G001500 Sobic003G149400--Sobic001G424650 Sobic008G065700--Sobic003G149400 Sobic008G065700--Sobic004G224000 Sobic008G065700--Sobic005G110553 Sobic008G065700--Sobic001G367900 Sobic003G092150 Sobic003G092150 Sobic008G065700--Sobic003G092150 Sobic007G226000 Sobic007G226000 Sobic008G065700--Sobic007G226000 Sobic008G065700--Sobic009G122000 Sobic007G210200 Sobic007G210200 Sobic008G065700--Sobic007G210200 Sobic002G377400 Sobic002G377400 Sobic008G065700--Sobic002G377400 Sobic009G122000--Sobic005G110553 Sobic009G122000--Sobic003G149400 Sobic009G122000--Sobic001G424650 Sobic009G122000--Sobic004G224000 Sobic009G122000--Sobic007G010400 Sobic009G122000--Sobic008G065700 Sobic009G122000--Sobic007G210200 Sobic010G019500 Sobic010G019500 Sobic009G122000--Sobic010G019500 Sobic009G122000--Sobic001G367900 Sobic009G088300 Sobic009G088300 Sobic001G424650--Sobic009G088300 Sobic001G424650--Sobic001G492400 Sobic001G424650--Sobic005G110553 Sobic001G370800 Sobic001G370800 Sobic001G424650--Sobic001G370800 Sobic001G442000 Sobic001G442000 Sobic001G424650--Sobic001G442000 Sobic001G424650--Sobic009G122000 Sobic001G334400 Sobic001G334400 Sobic001G424650--Sobic001G334400 Sobic001G424650--Sobic004G224000 Sobic006G255200 Sobic006G255200 Sobic001G424650--Sobic006G255200 Sobic005G110553--Sobic009G122000 Sobic005G110553--Sobic001G424650 Sobic005G110553--Sobic003G149400 Sobic006G268100 Sobic006G268100 Sobic005G110553--Sobic006G268100 Sobic005G110553--Sobic008G065700 Sobic005G110553--Sobic004G224000 Sobic005G110553--Sobic001G334400 Sobic009G183650 Sobic009G183650 Sobic005G110553--Sobic009G183650 Sobic005G110553--Sobic007G210200 Sobic003G440500 Sobic003G440500 Sobic010G249600--Sobic003G440500 Sobic002G398600 Sobic002G398600 Sobic010G249600--Sobic002G398600 Sobic010G249600--Sobic002G377400 Sobic003G308900 Sobic003G308900 Sobic010G249600--Sobic003G308900 Sobic008G016800 Sobic008G016800 Sobic010G249600--Sobic008G016800 Sobic009G223900 Sobic009G223900 Sobic010G249600--Sobic009G223900 Sobic002G085600 Sobic002G085600 Sobic010G249600--Sobic002G085600 Sobic010G249600--Sobic004G224000 Sobic001G191300 Sobic001G191300 Sobic010G249600--Sobic001G191300 Sobic001G492400--Sobic001G424650 Sobic002G187900 Sobic002G187900 Sobic001G492400--Sobic002G187900 Sobic001G492400--Sobic009G088300 Sobic004G173200 Sobic004G173200 Sobic001G492400--Sobic004G173200 Sobic001G492400--Sobic001G370800 Sobic001G492400--Sobic006G255200 Sobic003G225200 Sobic003G225200 Sobic001G492400--Sobic003G225200 Sobic002G262850 Sobic002G262850 Sobic001G492400--Sobic002G262850 Sobic008G177100 Sobic008G177100 Sobic001G492400--Sobic008G177100 Sobic001G503700--Sobic009G223900 Sobic001G503700--Sobic003G149400 Sobic001G503700--Sobic003G225200 Sobic001G503700--Sobic002G001500 Sobic007G077466 Sobic007G077466 Sobic001G503700--Sobic007G077466 Sobic001G503700--Sobic004G173200 Sobic001G503700--Sobic007G010400 Sobic010G000200 Sobic010G000200 Sobic001G503700--Sobic010G000200 Sobic002G110600 Sobic002G110600 Sobic001G503700--Sobic002G110600 Sobic008G016400 Sobic008G016400 Sobic006G118150--Sobic008G016400 Sobic006G118150--Sobic004G224000 Sobic006G118150--Sobic001G424650 Sobic006G118150--Sobic001G492400 Sobic006G118150--Sobic009G122000 Sobic006G118150--Sobic003G149400 Sobic006G118150--Sobic007G077466 Sobic006G118150--Sobic001G503700 Sobic006G165700 Sobic006G165700 Sobic006G118150--Sobic006G165700
Octagon: transcription factors


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