Gene annotation
Transcriptome id Sobic.004G227600.1
Synonym ATCPL1, Sb04g027200, FRY2, CPL1
Functional annotation double-stranded RNA binding motif containing protein, expressed
UniProt C5XY97
Pfam PF03031 PF00035
Panther DB PTHR23081 PTHR23081:SF6
NCBI CDD KOG0323; TFIIF-interacting CTD phosphatases, including NLI-interacting factor
KEGG Orthology K18998; RNA polymerase II C-terminal domain phosphatase-like 1/2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G21670 : C-terminal domain phosphatase-like 1
RAP-DB (Rice) LOC_Os02g42600.1 : double-stranded RNA binding motif containing protein, expressed
MaizeGDB (Corn) Zm00025a032107 , Zm00025a021002 , Zm00025a003151
Brachypodium KQJ83720 , PNT61531 , PNT61530 , KQJ83719 , KQJ83718 , KQK00494 , PNT69120 , PNT69121
Barley HORVU6Hr1G060230.24 , HORVU6Hr1G060230.20 , HORVU6Hr1G060230.21 , HORVU6Hr1G060230.22 , HORVU6Hr1G060230.23 , HORVU2Hr1G091030.19 , HORVU2Hr1G091030.18 , HORVU2Hr1G091030.17 , HORVU2Hr1G091030.16 , HORVU2Hr1G091030.15 , HORVU2Hr1G091030.14 , HORVU2Hr1G091030.13 , HORVU2Hr1G091030.12 , HORVU2Hr1G091030.11 , HORVU2Hr1G091030.10 , HORVU6Hr1G060230.11 , HORVU6Hr1G060230.10 , HORVU6Hr1G060230.13 , HORVU6Hr1G060230.12 , HORVU6Hr1G060230.15 , HORVU6Hr1G060230.14 , HORVU6Hr1G060230.17 , HORVU6Hr1G060230.16 , HORVU6Hr1G060230.19 , HORVU6Hr1G060230.5 , HORVU6Hr1G060230.4 , HORVU6Hr1G060230.7 , HORVU6Hr1G060230.6 , HORVU6Hr1G060230.1 , HORVU6Hr1G060230.3 , HORVU6Hr1G060230.2 , HORVU6Hr1G060230.9 , HORVU6Hr1G060230.8 , HORVU2Hr1G091030.7 , HORVU2Hr1G091030.6 , HORVU2Hr1G091030.5 , HORVU2Hr1G091030.4 , HORVU2Hr1G091030.3 , HORVU2Hr1G091030.2 , HORVU2Hr1G091030.1 , HORVU2Hr1G091030.8 , HORVU2Hr1G091030.9
Wheat TraesCS6D02G218000 , TraesCS6D02G218000 , TraesCS6D02G218000 , TraesCS6D02G218000 , TraesCS6D02G218000 , TraesCS2D02G369600 , TraesCS2D02G369600 , TraesCS2D02G369600 , TraesCS2D02G369600 , TraesCS2D02G369600 , TraesCS2D02G369600 , TraesCS2A02G373400 , TraesCS2A02G373400 , TraesCS2A02G373400 , TraesCS2A02G373400 , TraesCS2A02G373400 , TraesCS2A02G373400 , TraesCS2A02G373400 , TraesCS6B02G264000 , TraesCS6B02G264000 , TraesCS6B02G264000 , TraesCS6B02G264000 , TraesCS2B02G390500 , TraesCS2B02G390500 , TraesCS2B02G390500 , TraesCS6A02G235300 , TraesCS6A02G235300 , TraesCS6A02G235300 , TraesCS6A02G235300 , TraesCS6A02G235300 , TraesCS2A02G373400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G192900 -(PubMedID : 29751546)@sodium/hydrogen exchanger 7, putative, expressed -
2 Sobic.007G075600 pectinesterase, putative, expressed -
3 Sobic.001G442000 Ser/Thr protein phosphatase family protein, putative, expressed K14379: tartrate-resistant acid phosphatase type 5
4 Sobic.001G454600 expressed protein -
5 Sobic.005G068000 expressed protein -
6 Sobic.004G218400 - -
7 Sobic.004G072201 - -
8 Sobic.004G127600 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
9 Sobic.003G067600 receptor kinase, putative, expressed -
10 Sobic.006G074500 protein of unknown function DUF1279 domain containing protein, expressed -
11 Sobic.001G184300 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
12 Sobic.003G124400 - -
13 Sobic.004G227700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase, putative, expressed -
14 Sobic.001G090700 expressed protein -
15 Sobic.009G094200 - -
16 Sobic.003G001650 - -
17 Sobic.003G174500 - -
18 Sobic.005G150501 - -
19 Sobic.001G370800 - -
20 Sobic.005G027350 - -


Gene co-expression network
sample Sobic004G227600 Sobic004G227600 Sobic008G192900 Sobic008G192900 Sobic004G227600--Sobic008G192900 Sobic007G075600 Sobic007G075600 Sobic004G227600--Sobic007G075600 Sobic001G442000 Sobic001G442000 Sobic004G227600--Sobic001G442000 Sobic001G454600 Sobic001G454600 Sobic004G227600--Sobic001G454600 Sobic005G068000 Sobic005G068000 Sobic004G227600--Sobic005G068000 Sobic004G218400 Sobic004G218400 Sobic004G227600--Sobic004G218400 Sobic004G072201 Sobic004G072201 Sobic004G227600--Sobic004G072201 Sobic004G127600 Sobic004G127600 Sobic004G227600--Sobic004G127600 Sobic003G067600 Sobic003G067600 Sobic004G227600--Sobic003G067600 Sobic008G103400 Sobic008G103400 Sobic008G192900--Sobic008G103400 Sobic002G398600 Sobic002G398600 Sobic008G192900--Sobic002G398600 Sobic004G173200 Sobic004G173200 Sobic008G192900--Sobic004G173200 Sobic010G012200 Sobic010G012200 Sobic008G192900--Sobic010G012200 Sobic001G370800 Sobic001G370800 Sobic008G192900--Sobic001G370800 Sobic010G000200 Sobic010G000200 Sobic008G192900--Sobic010G000200 Sobic003G362800 Sobic003G362800 Sobic008G192900--Sobic003G362800 Sobic003G262600 Sobic003G262600 Sobic008G192900--Sobic003G262600 Sobic003G155000 Sobic003G155000 Sobic008G192900--Sobic003G155000 Sobic007G075600--Sobic004G072201 Sobic006G157450 Sobic006G157450 Sobic007G075600--Sobic006G157450 Sobic001G038700 Sobic001G038700 Sobic007G075600--Sobic001G038700 Sobic002G302800 Sobic002G302800 Sobic007G075600--Sobic002G302800 Sobic001G383200 Sobic001G383200 Sobic007G075600--Sobic001G383200 Sobic001G090700 Sobic001G090700 Sobic007G075600--Sobic001G090700 Sobic002G374000 Sobic002G374000 Sobic007G075600--Sobic002G374000 Sobic001G191500 Sobic001G191500 Sobic007G075600--Sobic001G191500 Sobic010G042300 Sobic010G042300 Sobic007G075600--Sobic010G042300 Sobic006G255200 Sobic006G255200 Sobic001G442000--Sobic006G255200 Sobic001G442000--Sobic004G072201 Sobic001G442000--Sobic001G370800 Sobic001G442000--Sobic004G127600 Sobic009G088300 Sobic009G088300 Sobic001G442000--Sobic009G088300 Sobic002G309300 Sobic002G309300 Sobic001G442000--Sobic002G309300 Sobic009G026600 Sobic009G026600 Sobic001G442000--Sobic009G026600 Sobic001G442000--Sobic001G038700 Sobic002G187900 Sobic002G187900 Sobic001G442000--Sobic002G187900 Sobic001G454600--Sobic001G090700 Sobic008G170800 Sobic008G170800 Sobic001G454600--Sobic008G170800 Sobic002G206900 Sobic002G206900 Sobic001G454600--Sobic002G206900 Sobic003G040300 Sobic003G040300 Sobic001G454600--Sobic003G040300 Sobic003G001650 Sobic003G001650 Sobic001G454600--Sobic003G001650 Sobic001G454600--Sobic004G218400 Sobic001G454600--Sobic001G038700 Sobic006G167400 Sobic006G167400 Sobic001G454600--Sobic006G167400 Sobic001G454600--Sobic003G362800 Sobic003G124400 Sobic003G124400 Sobic005G068000--Sobic003G124400 Sobic001G239000 Sobic001G239000 Sobic005G068000--Sobic001G239000 Sobic003G312800 Sobic003G312800 Sobic005G068000--Sobic003G312800 Sobic008G037300 Sobic008G037300 Sobic005G068000--Sobic008G037300 Sobic005G027350 Sobic005G027350 Sobic005G068000--Sobic005G027350 Sobic003G312900 Sobic003G312900 Sobic005G068000--Sobic003G312900 Sobic005G068000--Sobic002G309300 Sobic003G375500 Sobic003G375500 Sobic005G068000--Sobic003G375500 Sobic003G174500 Sobic003G174500 Sobic005G068000--Sobic003G174500 Sobic004G218400--Sobic002G309300 Sobic004G218400--Sobic001G038700 Sobic006G268100 Sobic006G268100 Sobic004G218400--Sobic006G268100 Sobic004G218400--Sobic001G370800 Sobic004G218400--Sobic006G255200 Sobic004G218400--Sobic003G001650 Sobic002G274000 Sobic002G274000 Sobic004G218400--Sobic002G274000 Sobic004G218400--Sobic003G067600 Sobic004G218400--Sobic004G072201 Sobic004G072201--Sobic001G383200 Sobic004G072201--Sobic002G374000 Sobic001G109400 Sobic001G109400 Sobic004G072201--Sobic001G109400 Sobic004G072201--Sobic002G309300 Sobic004G072201--Sobic001G038700 Sobic004G072201--Sobic001G442000 Sobic004G072201--Sobic006G255200 Sobic003G263900 Sobic003G263900 Sobic004G072201--Sobic003G263900 Sobic007G183600 Sobic007G183600 Sobic004G072201--Sobic007G183600 Sobic004G127600--Sobic002G187900 Sobic004G127600--Sobic003G263900 Sobic004G127600--Sobic006G255200 Sobic004G127600--Sobic001G442000 Sobic001G212900 Sobic001G212900 Sobic004G127600--Sobic001G212900 Sobic004G127600--Sobic001G109400 Sobic004G127600--Sobic002G374000 Sobic004G127600--Sobic004G072201 Sobic004G127600--Sobic001G038700 Sobic003G067600--Sobic004G218400 Sobic002G228300 Sobic002G228300 Sobic003G067600--Sobic002G228300 Sobic003G067600--Sobic002G274000 Sobic006G138300 Sobic006G138300 Sobic003G067600--Sobic006G138300 Sobic003G067600--Sobic001G370800 Sobic003G067600--Sobic001G038700 Sobic001G334400 Sobic001G334400 Sobic003G067600--Sobic001G334400 Sobic003G067600--Sobic006G268100 Sobic003G304000 Sobic003G304000 Sobic003G067600--Sobic003G304000
Octagon: transcription factors


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