Gene annotation
Transcriptome id Sobic.001G090700.1
Synonym Sb01g008190, Psb27-H1, LPA19
Functional annotation expressed protein
UniProt A0A1B6QI16
Pfam PF13326
Panther DB PTHR34041 PTHR34041:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0010207; photosystem II assembly


Orthologs (automatic annotation)
TAIR AT1G05385 : photosystem II 11 kDa protein-related
RAP-DB (Rice) LOC_Os03g53640.1 : expressed protein
MaizeGDB (Corn) Zm00025a016814
Brachypodium -
Barley -
Wheat TraesCS5D02G396200 , TraesCS5A02G386400 , TraesCS5B02G391300
Populus -


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cDNA sequences
Sobic.001G090700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G170800 OsWAK126 - OsWAK receptor-like protein kinase, expressed -
2 Sobic.001G454600 expressed protein -
3 Sobic.010G042300 DTA2, putative, expressed -
4 Sobic.001G038700 membrane associated DUF588 domain containing protein, putative, expressed -
5 Sobic.006G279100 Positive regulator of ABA(PubMedID : 30367619)@CAMK_CAMK_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
6 Sobic.009G026600 - -
7 Sobic.001G460900 expressed protein -
8 Sobic.010G012200 - K00851: E2.7.1.12, gntK, gluconokinase
9 Sobic.008G190600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, putative, expressed K07007: 3-dehydro-bile acid Delta4,6-reductase
10 Sobic.009G074800 - -
11 Sobic.002G206900 GEX2, putative, expressed -
12 Sobic.007G075600 pectinesterase, putative, expressed -
13 Sobic.003G040300 cytochrome P450, putative, expressed -
14 Sobic.008G103400 universal stress protein domain containing protein, putative, expressed -
15 Sobic.005G027350 - -
16 Sobic.006G157450 - -
17 Sobic.001G483001 - -
18 Sobic.002G208700 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
19 Sobic.002G033200 ATPase BadF/BadG/BcrA/BcrD type, putative, expressed -
20 Sobic.002G309300 beta-expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic001G090700 Sobic001G090700 Sobic008G170800 Sobic008G170800 Sobic001G090700--Sobic008G170800 Sobic001G454600 Sobic001G454600 Sobic001G090700--Sobic001G454600 Sobic010G042300 Sobic010G042300 Sobic001G090700--Sobic010G042300 Sobic001G038700 Sobic001G038700 Sobic001G090700--Sobic001G038700 Sobic006G279100 Sobic006G279100 Sobic001G090700--Sobic006G279100 Sobic009G026600 Sobic009G026600 Sobic001G090700--Sobic009G026600 Sobic001G460900 Sobic001G460900 Sobic001G090700--Sobic001G460900 Sobic010G012200 Sobic010G012200 Sobic001G090700--Sobic010G012200 Sobic008G190600 Sobic008G190600 Sobic001G090700--Sobic008G190600 Sobic008G170800--Sobic001G090700 Sobic006G157450 Sobic006G157450 Sobic008G170800--Sobic006G157450 Sobic008G170800--Sobic001G038700 Sobic008G170800--Sobic010G012200 Sobic008G170800--Sobic008G190600 Sobic003G155000 Sobic003G155000 Sobic008G170800--Sobic003G155000 Sobic008G170800--Sobic001G454600 Sobic008G142200 Sobic008G142200 Sobic008G170800--Sobic008G142200 Sobic003G253700 Sobic003G253700 Sobic008G170800--Sobic003G253700 Sobic001G454600--Sobic001G090700 Sobic001G454600--Sobic008G170800 Sobic002G206900 Sobic002G206900 Sobic001G454600--Sobic002G206900 Sobic003G040300 Sobic003G040300 Sobic001G454600--Sobic003G040300 Sobic003G001650 Sobic003G001650 Sobic001G454600--Sobic003G001650 Sobic004G218400 Sobic004G218400 Sobic001G454600--Sobic004G218400 Sobic001G454600--Sobic001G038700 Sobic006G167400 Sobic006G167400 Sobic001G454600--Sobic006G167400 Sobic003G362800 Sobic003G362800 Sobic001G454600--Sobic003G362800 Sobic010G042300--Sobic006G279100 Sobic010G042300--Sobic001G090700 Sobic010G042300--Sobic008G170800 Sobic008G103400 Sobic008G103400 Sobic010G042300--Sobic008G103400 Sobic010G042300--Sobic003G001650 Sobic002G208700 Sobic002G208700 Sobic010G042300--Sobic002G208700 Sobic001G383200 Sobic001G383200 Sobic010G042300--Sobic001G383200 Sobic004G072201 Sobic004G072201 Sobic010G042300--Sobic004G072201 Sobic002G309300 Sobic002G309300 Sobic010G042300--Sobic002G309300 Sobic001G038700--Sobic006G157450 Sobic003G263900 Sobic003G263900 Sobic001G038700--Sobic003G263900 Sobic001G038700--Sobic002G309300 Sobic001G038700--Sobic004G218400 Sobic001G038700--Sobic010G012200 Sobic001G038700--Sobic008G170800 Sobic001G038700--Sobic004G072201 Sobic001G038700--Sobic009G026600 Sobic001G038700--Sobic008G142200 Sobic006G279100--Sobic010G042300 Sobic005G070951 Sobic005G070951 Sobic006G279100--Sobic005G070951 Sobic001G483001 Sobic001G483001 Sobic006G279100--Sobic001G483001 Sobic006G279100--Sobic001G090700 Sobic006G279100--Sobic008G170800 Sobic006G279100--Sobic002G208700 Sobic006G279100--Sobic001G460900 Sobic005G228650 Sobic005G228650 Sobic006G279100--Sobic005G228650 Sobic001G150100 Sobic001G150100 Sobic006G279100--Sobic001G150100 Sobic001G370800 Sobic001G370800 Sobic009G026600--Sobic001G370800 Sobic003G063400 Sobic003G063400 Sobic009G026600--Sobic003G063400 Sobic005G027350 Sobic005G027350 Sobic009G026600--Sobic005G027350 Sobic009G026600--Sobic001G038700 Sobic004G250400 Sobic004G250400 Sobic009G026600--Sobic004G250400 Sobic001G001800 Sobic001G001800 Sobic009G026600--Sobic001G001800 Sobic008G037300 Sobic008G037300 Sobic009G026600--Sobic008G037300 Sobic009G026600--Sobic002G309300 Sobic009G026600--Sobic010G012200 Sobic001G460900--Sobic009G026600 Sobic009G074800 Sobic009G074800 Sobic001G460900--Sobic009G074800 Sobic001G460900--Sobic008G190600 Sobic001G460900--Sobic008G170800 Sobic001G460900--Sobic005G027350 Sobic001G460900--Sobic001G090700 Sobic001G460900--Sobic002G309300 Sobic001G460900--Sobic001G038700 Sobic009G186300 Sobic009G186300 Sobic001G460900--Sobic009G186300 Sobic001G520000 Sobic001G520000 Sobic010G012200--Sobic001G520000 Sobic010G012200--Sobic003G155000 Sobic010G012200--Sobic003G253700 Sobic010G012200--Sobic001G038700 Sobic010G012200--Sobic008G170800 Sobic010G012200--Sobic006G157450 Sobic010G000200 Sobic010G000200 Sobic010G012200--Sobic010G000200 Sobic004G315400 Sobic004G315400 Sobic010G012200--Sobic004G315400 Sobic010G012200--Sobic008G103400 Sobic008G190600--Sobic009G074800 Sobic001G191500 Sobic001G191500 Sobic008G190600--Sobic001G191500 Sobic005G031400 Sobic005G031400 Sobic008G190600--Sobic005G031400 Sobic008G190600--Sobic008G142200 Sobic008G190600--Sobic008G170800 Sobic008G190600--Sobic006G157450 Sobic003G219300 Sobic003G219300 Sobic008G190600--Sobic003G219300 Sobic008G190600--Sobic001G460900 Sobic002G226200 Sobic002G226200 Sobic008G190600--Sobic002G226200
Octagon: transcription factors


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