Gene annotation
Transcriptome id Sobic.007G075600.1
Synonym Sb07g006050
Functional annotation pectinesterase, putative, expressed
UniProt C5YIK0
Pfam PF01095
Panther DB PTHR31321 PTHR31321:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005618; cell wall


Orthologs (automatic annotation)
TAIR AT1G05310 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os08g10604.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a054861
Brachypodium KQJ95578
Barley HORVU4Hr1G073610.9 , HORVU4Hr1G073610.8 , HORVU4Hr1G073610.1 , HORVU4Hr1G073610.3 , HORVU4Hr1G073610.2 , HORVU4Hr1G073610.5 , HORVU4Hr1G073610.4 , HORVU4Hr1G073610.7 , HORVU4Hr1G073610.6 , HORVU4Hr1G073610.11 , HORVU4Hr1G073610.10 , HORVU4Hr1G073610.13 , HORVU4Hr1G073610.12
Wheat TraesCS4D02G276200 , TraesCS4D02G276200 , TraesCS4B02G277900 , TraesCS4B02G277900 , TraesCS4A02G028000 , TraesCS4A02G028000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G072201 - -
2 Sobic.006G157450 - -
3 Sobic.001G038700 membrane associated DUF588 domain containing protein, putative, expressed -
4 Sobic.002G302800 ATROPGEF7/ROPGEF7, putative, expressed -
5 Sobic.001G383200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@bromodomain domain containing protein, expressed -
6 Sobic.001G090700 expressed protein -
7 Sobic.002G374000 - -
8 Sobic.001G191500 expressed protein -
9 Sobic.010G042300 DTA2, putative, expressed -
10 Sobic.002G208700 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
11 Sobic.003G263900 reticulon domain containing protein, putative, expressed -
12 Sobic.006G140450 - -
13 Sobic.005G031400 embryogenesis transmembrane protein, putative, expressed -
14 Sobic.001G190900 ABCG protein(PubMedID : 21265893)@"Orthologous gene of wheat Lr34 gene, expressed in accession AusTRCF 302546, but not expreesed in BTx623 possibly due to transposon insertions in intron 4"(PubMedID : 23117720)@pleiotropic drug resistance protein 15, putative, expressed -
15 Sobic.010G012200 - K00851: E2.7.1.12, gntK, gluconokinase
16 Sobic.008G190600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, putative, expressed K07007: 3-dehydro-bile acid Delta4,6-reductase
17 Sobic.008G170800 OsWAK126 - OsWAK receptor-like protein kinase, expressed -
18 Sobic.001G483001 - -
19 Sobic.002G033200 ATPase BadF/BadG/BcrA/BcrD type, putative, expressed -
20 Sobic.009G094200 - -


Gene co-expression network
sample Sobic007G075600 Sobic007G075600 Sobic004G072201 Sobic004G072201 Sobic007G075600--Sobic004G072201 Sobic006G157450 Sobic006G157450 Sobic007G075600--Sobic006G157450 Sobic001G038700 Sobic001G038700 Sobic007G075600--Sobic001G038700 Sobic002G302800 Sobic002G302800 Sobic007G075600--Sobic002G302800 Sobic001G383200 Sobic001G383200 Sobic007G075600--Sobic001G383200 Sobic001G090700 Sobic001G090700 Sobic007G075600--Sobic001G090700 Sobic002G374000 Sobic002G374000 Sobic007G075600--Sobic002G374000 Sobic001G191500 Sobic001G191500 Sobic007G075600--Sobic001G191500 Sobic010G042300 Sobic010G042300 Sobic007G075600--Sobic010G042300 Sobic004G072201--Sobic001G383200 Sobic004G072201--Sobic002G374000 Sobic001G109400 Sobic001G109400 Sobic004G072201--Sobic001G109400 Sobic002G309300 Sobic002G309300 Sobic004G072201--Sobic002G309300 Sobic004G072201--Sobic001G038700 Sobic001G442000 Sobic001G442000 Sobic004G072201--Sobic001G442000 Sobic006G255200 Sobic006G255200 Sobic004G072201--Sobic006G255200 Sobic003G263900 Sobic003G263900 Sobic004G072201--Sobic003G263900 Sobic007G183600 Sobic007G183600 Sobic004G072201--Sobic007G183600 Sobic006G157450--Sobic001G038700 Sobic008G170800 Sobic008G170800 Sobic006G157450--Sobic008G170800 Sobic006G157450--Sobic001G191500 Sobic001G520000 Sobic001G520000 Sobic006G157450--Sobic001G520000 Sobic010G012200 Sobic010G012200 Sobic006G157450--Sobic010G012200 Sobic003G253700 Sobic003G253700 Sobic006G157450--Sobic003G253700 Sobic003G155000 Sobic003G155000 Sobic006G157450--Sobic003G155000 Sobic001G483001 Sobic001G483001 Sobic006G157450--Sobic001G483001 Sobic008G190600 Sobic008G190600 Sobic006G157450--Sobic008G190600 Sobic001G038700--Sobic006G157450 Sobic001G038700--Sobic003G263900 Sobic001G038700--Sobic002G309300 Sobic004G218400 Sobic004G218400 Sobic001G038700--Sobic004G218400 Sobic001G038700--Sobic010G012200 Sobic001G038700--Sobic008G170800 Sobic001G038700--Sobic004G072201 Sobic009G026600 Sobic009G026600 Sobic001G038700--Sobic009G026600 Sobic008G142200 Sobic008G142200 Sobic001G038700--Sobic008G142200 Sobic002G302800--Sobic007G075600 Sobic002G208700 Sobic002G208700 Sobic002G302800--Sobic002G208700 Sobic003G329300 Sobic003G329300 Sobic002G302800--Sobic003G329300 Sobic009G176100 Sobic009G176100 Sobic002G302800--Sobic009G176100 Sobic007G096833 Sobic007G096833 Sobic002G302800--Sobic007G096833 Sobic006G215650 Sobic006G215650 Sobic002G302800--Sobic006G215650 Sobic002G033200 Sobic002G033200 Sobic002G302800--Sobic002G033200 Sobic004G118300 Sobic004G118300 Sobic002G302800--Sobic004G118300 Sobic007G056300 Sobic007G056300 Sobic002G302800--Sobic007G056300 Sobic001G383200--Sobic004G072201 Sobic001G383200--Sobic001G109400 Sobic001G383200--Sobic002G374000 Sobic001G383200--Sobic002G309300 Sobic001G383200--Sobic003G263900 Sobic001G383200--Sobic006G157450 Sobic001G383200--Sobic001G038700 Sobic008G103400 Sobic008G103400 Sobic001G383200--Sobic008G103400 Sobic001G383200--Sobic006G255200 Sobic001G090700--Sobic008G170800 Sobic001G454600 Sobic001G454600 Sobic001G090700--Sobic001G454600 Sobic001G090700--Sobic010G042300 Sobic001G090700--Sobic001G038700 Sobic006G279100 Sobic006G279100 Sobic001G090700--Sobic006G279100 Sobic001G090700--Sobic009G026600 Sobic001G460900 Sobic001G460900 Sobic001G090700--Sobic001G460900 Sobic001G090700--Sobic010G012200 Sobic001G090700--Sobic008G190600 Sobic002G374000--Sobic004G072201 Sobic002G374000--Sobic001G109400 Sobic004G315400 Sobic004G315400 Sobic002G374000--Sobic004G315400 Sobic001G212900 Sobic001G212900 Sobic002G374000--Sobic001G212900 Sobic002G374000--Sobic001G383200 Sobic004G127600 Sobic004G127600 Sobic002G374000--Sobic004G127600 Sobic002G374000--Sobic007G183600 Sobic003G069601 Sobic003G069601 Sobic002G374000--Sobic003G069601 Sobic002G374000--Sobic010G012200 Sobic001G191500--Sobic008G190600 Sobic001G191500--Sobic008G142200 Sobic009G137401 Sobic009G137401 Sobic001G191500--Sobic009G137401 Sobic001G191500--Sobic006G157450 Sobic006G072701 Sobic006G072701 Sobic001G191500--Sobic006G072701 Sobic001G190900 Sobic001G190900 Sobic001G191500--Sobic001G190900 Sobic008G083100 Sobic008G083100 Sobic001G191500--Sobic008G083100 Sobic004G033650 Sobic004G033650 Sobic001G191500--Sobic004G033650 Sobic009G074800 Sobic009G074800 Sobic001G191500--Sobic009G074800 Sobic010G042300--Sobic006G279100 Sobic010G042300--Sobic001G090700 Sobic010G042300--Sobic008G170800 Sobic010G042300--Sobic008G103400 Sobic003G001650 Sobic003G001650 Sobic010G042300--Sobic003G001650 Sobic010G042300--Sobic002G208700 Sobic010G042300--Sobic001G383200 Sobic010G042300--Sobic004G072201 Sobic010G042300--Sobic002G309300
Octagon: transcription factors


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