Gene annotation
Transcriptome id Sobic.004G327200.1
Synonym Sb04g035660, TIC55-II
Functional annotation pheophorbide a oxygenase, chloroplast precursor, putative, expressed
UniProt C5XUD5
Pfam PF00355 PF08417
Panther DB PTHR21266 PTHR21266:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0010277chlorophyllide a oxygenase [overall] activity


Orthologs (automatic annotation)
TAIR AT2G24820 : translocon at the inner envelope membrane of chloroplasts 55-II
RAP-DB (Rice) LOC_Os02g54980.1 : pheophorbide a oxygenase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a022439
Brachypodium KQK01100
Barley HORVU6Hr1G084510.2 , HORVU6Hr1G084510.3 , HORVU6Hr1G084510.1
Wheat TraesCS6D02G336000 , TraesCS6B02G386400 , TraesCS6A02G353700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G080000 OsSPL15 - SBP-box gene family member, expressed -
2 Sobic.003G253700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
3 Sobic.006G249600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
4 Sobic.003G155000 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
5 Sobic.002G209450 - -
6 Sobic.009G223900 protein binding protein, putative, expressed -
7 Sobic.002G413800 Spc97 / Spc98 family protein, putative, expressed -
8 Sobic.002G398600 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
9 Sobic.009G112500 lipase, putative, expressed -
10 Sobic.003G139100 - -
11 Sobic.003G262600 OsWAK10d - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed -
12 Sobic.003G298000 - -
13 Sobic.001G520000 auxin efflux carrier component, putative, expressed -
14 Sobic.009G252500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial chaperone BCS1, putative, expressed K08900: mitochondrial chaperone BCS1
15 Sobic.003G155800 dnaJ homolog subfamily B member 11 precursor, putative, expressed K09517: DnaJ homolog subfamily B member 11
16 Sobic.008G170800 OsWAK126 - OsWAK receptor-like protein kinase, expressed -
17 Sobic.008G142200 serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
18 Sobic.005G096201 - -
19 Sobic.006G157450 - -
20 Sobic.003G362800 - -


Gene co-expression network
sample Sobic004G327200 Sobic004G327200 Sobic009G080000 Sobic009G080000 Sobic004G327200--Sobic009G080000 Sobic003G253700 Sobic003G253700 Sobic004G327200--Sobic003G253700 Sobic006G249600 Sobic006G249600 Sobic004G327200--Sobic006G249600 Sobic003G155000 Sobic003G155000 Sobic004G327200--Sobic003G155000 Sobic002G209450 Sobic002G209450 Sobic004G327200--Sobic002G209450 Sobic009G223900 Sobic009G223900 Sobic004G327200--Sobic009G223900 Sobic002G413800 Sobic002G413800 Sobic004G327200--Sobic002G413800 Sobic002G398600 Sobic002G398600 Sobic004G327200--Sobic002G398600 Sobic009G112500 Sobic009G112500 Sobic004G327200--Sobic009G112500 Sobic009G080000--Sobic004G327200 Sobic009G080000--Sobic003G253700 Sobic009G080000--Sobic006G249600 Sobic009G080000--Sobic003G155000 Sobic002G187900 Sobic002G187900 Sobic009G080000--Sobic002G187900 Sobic008G142200 Sobic008G142200 Sobic009G080000--Sobic008G142200 Sobic003G262600 Sobic003G262600 Sobic009G080000--Sobic003G262600 Sobic006G134300 Sobic006G134300 Sobic009G080000--Sobic006G134300 Sobic003G263900 Sobic003G263900 Sobic009G080000--Sobic003G263900 Sobic003G253700--Sobic003G155000 Sobic001G520000 Sobic001G520000 Sobic003G253700--Sobic001G520000 Sobic003G365200 Sobic003G365200 Sobic003G253700--Sobic003G365200 Sobic010G012200 Sobic010G012200 Sobic003G253700--Sobic010G012200 Sobic003G253700--Sobic006G249600 Sobic006G157450 Sobic006G157450 Sobic003G253700--Sobic006G157450 Sobic003G155800 Sobic003G155800 Sobic003G253700--Sobic003G155800 Sobic008G170800 Sobic008G170800 Sobic003G253700--Sobic008G170800 Sobic003G253700--Sobic003G262600 Sobic001G212900 Sobic001G212900 Sobic006G249600--Sobic001G212900 Sobic006G249600--Sobic002G398600 Sobic006G249600--Sobic002G187900 Sobic006G249600--Sobic003G253700 Sobic006G249600--Sobic003G155000 Sobic006G249600--Sobic003G263900 Sobic001G109400 Sobic001G109400 Sobic006G249600--Sobic001G109400 Sobic004G173200 Sobic004G173200 Sobic006G249600--Sobic004G173200 Sobic006G249600--Sobic006G157450 Sobic003G155000--Sobic003G253700 Sobic003G155000--Sobic001G520000 Sobic003G155000--Sobic010G012200 Sobic003G155000--Sobic003G365200 Sobic003G155000--Sobic003G262600 Sobic005G048800 Sobic005G048800 Sobic003G155000--Sobic005G048800 Sobic003G155000--Sobic006G249600 Sobic003G155000--Sobic008G170800 Sobic003G155000--Sobic006G157450 Sobic005G096201 Sobic005G096201 Sobic002G209450--Sobic005G096201 Sobic009G252500 Sobic009G252500 Sobic002G209450--Sobic009G252500 Sobic002G209450--Sobic003G253700 Sobic003G298000 Sobic003G298000 Sobic002G209450--Sobic003G298000 Sobic007G046600 Sobic007G046600 Sobic002G209450--Sobic007G046600 Sobic002G209450--Sobic003G155000 Sobic002G209450--Sobic001G520000 Sobic001G494400 Sobic001G494400 Sobic002G209450--Sobic001G494400 Sobic001G191500 Sobic001G191500 Sobic002G209450--Sobic001G191500 Sobic002G001500 Sobic002G001500 Sobic009G223900--Sobic002G001500 Sobic004G181000 Sobic004G181000 Sobic009G223900--Sobic004G181000 Sobic003G362800 Sobic003G362800 Sobic009G223900--Sobic003G362800 Sobic009G223900--Sobic003G155800 Sobic009G223900--Sobic002G398600 Sobic008G103400 Sobic008G103400 Sobic009G223900--Sobic008G103400 Sobic001G503700 Sobic001G503700 Sobic009G223900--Sobic001G503700 Sobic001G113400 Sobic001G113400 Sobic009G223900--Sobic001G113400 Sobic009G223900--Sobic003G262600 Sobic003G429600 Sobic003G429600 Sobic002G413800--Sobic003G429600 Sobic002G413800--Sobic004G327200 Sobic002G413800--Sobic005G096201 Sobic002G413800--Sobic002G209450 Sobic002G013600 Sobic002G013600 Sobic002G413800--Sobic002G013600 Sobic001G312801 Sobic001G312801 Sobic002G413800--Sobic001G312801 Sobic004G224100 Sobic004G224100 Sobic002G413800--Sobic004G224100 Sobic008G096300 Sobic008G096300 Sobic002G413800--Sobic008G096300 Sobic009G147600 Sobic009G147600 Sobic002G413800--Sobic009G147600 Sobic002G398600--Sobic006G249600 Sobic002G398600--Sobic004G173200 Sobic002G398600--Sobic003G263900 Sobic002G398600--Sobic002G187900 Sobic002G398600--Sobic009G223900 Sobic008G192900 Sobic008G192900 Sobic002G398600--Sobic008G192900 Sobic002G398600--Sobic001G212900 Sobic002G398600--Sobic008G103400 Sobic008G016800 Sobic008G016800 Sobic002G398600--Sobic008G016800 Sobic010G118401 Sobic010G118401 Sobic009G112500--Sobic010G118401 Sobic009G112500--Sobic004G327200 Sobic002G399000 Sobic002G399000 Sobic009G112500--Sobic002G399000 Sobic009G181900 Sobic009G181900 Sobic009G112500--Sobic009G181900 Sobic002G387000 Sobic002G387000 Sobic009G112500--Sobic002G387000 Sobic009G112500--Sobic006G249600 Sobic005G014400 Sobic005G014400 Sobic009G112500--Sobic005G014400 Sobic003G251900 Sobic003G251900 Sobic009G112500--Sobic003G251900 Sobic005G025400 Sobic005G025400 Sobic009G112500--Sobic005G025400
Octagon: transcription factors


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