Gene annotation
Transcriptome id Sobic.005G036900.1
Synonym
Functional annotation RCLEA6 - Root cap and Late embryogenesis related family protein precursor, expressed
UniProt A0A1B6PPZ3
Pfam PF06830
Panther DB PTHR31656 PTHR31656:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19430 : late embryogenesis abundant protein-related / LEA protein-related
RAP-DB (Rice) LOC_Os11g05360.1 : RCLEA9 - Root cap and Late embryogenesis related family protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a033481 , Zm00025a029575 , Zm00025a025854 , Zm00025a025852
Brachypodium KQK11722 , KQK11723 , KQJ92264 , KQJ92269 , KQK08082 , KQK09956
Barley HORVU2Hr1G101140.1 , HORVU2Hr1G101140.2 , HORVU3Hr1G075070.1 , HORVU3Hr1G113430.2 , HORVU5Hr1G082500.1 , HORVU3Hr1G113430.1 , HORVU3Hr1G099570.1 , HORVU3Hr1G113440.2 , HORVU3Hr1G113440.1 , HORVU1Hr1G002950.3 , HORVU1Hr1G002950.2 , HORVU1Hr1G002950.1
Wheat TraesCS2D02G431300 , TraesCS2D02G431100 , TraesCS2D02G431400 , TraesCS2B02G454400 , TraesCS2A02G433300 , TraesCS3A02G296600 , TraesCS5B02G323600 , TraesCS2A02G433100 , TraesCS1A02G023300 , TraesCS3B02G512300 , TraesCS2A02G433200 , TraesCS3D02G461500 , TraesCS3A02G468400 , TraesCS3D02G526000 , TraesCS3B02G586200 , TraesCS3B02G586300 , TraesCS2A02G433400 , TraesCS3B02G340500 , TraesCS1B02G029000 , TraesCS3A02G518800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G021700 eukaryotic aspartyl protease domain containing protein, expressed -
2 Sobic.002G391200 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.001G301400 expansin precursor, putative, expressed -
4 Sobic.002G307900 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.003G269900 OsSub12 - Putative Subtilisin homologue, expressed -
6 Sobic.001G212451 - -
7 Sobic.001G464300 helix-loop-helix DNA-binding domain containing protein, expressed -
8 Sobic.010G174100 expressed protein -
9 Sobic.007G087600 homeobox domain containing protein, expressed -
10 Sobic.010G139100 serine/threonine-protein kinase, putative, expressed -
11 Sobic.001G308600 POEI31 - Pollen Ole e I allergen and extensin family protein precursor, putative, expressed -
12 Sobic.009G096300 ATOFP17/OFP17, putative, expressed -
13 Sobic.002G082700 DUF567 domain containing protein, putative, expressed -
14 Sobic.010G158400 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.004G248500 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.010G115000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@limonoid UDP-glucosyltransferase, putative, expressed -
17 Sobic.004G323000 SCP-like extracellular protein, expressed -
18 Sobic.007G109600 expressed protein -
19 Sobic.002G122400 GLTP domain containing protein, putative, expressed -
20 Sobic.001G314100 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic005G036900 Sobic005G036900 Sobic010G021700 Sobic010G021700 Sobic005G036900--Sobic010G021700 Sobic002G391200 Sobic002G391200 Sobic005G036900--Sobic002G391200 Sobic001G301400 Sobic001G301400 Sobic005G036900--Sobic001G301400 Sobic002G307900 Sobic002G307900 Sobic005G036900--Sobic002G307900 Sobic003G269900 Sobic003G269900 Sobic005G036900--Sobic003G269900 Sobic001G212451 Sobic001G212451 Sobic005G036900--Sobic001G212451 Sobic001G464300 Sobic001G464300 Sobic005G036900--Sobic001G464300 Sobic010G174100 Sobic010G174100 Sobic005G036900--Sobic010G174100 Sobic007G087600 Sobic007G087600 Sobic005G036900--Sobic007G087600 Sobic010G021700--Sobic001G301400 Sobic010G021700--Sobic002G307900 Sobic010G021700--Sobic002G391200 Sobic009G096300 Sobic009G096300 Sobic010G021700--Sobic009G096300 Sobic010G021700--Sobic010G174100 Sobic010G139100 Sobic010G139100 Sobic010G021700--Sobic010G139100 Sobic001G314100 Sobic001G314100 Sobic010G021700--Sobic001G314100 Sobic001G308600 Sobic001G308600 Sobic010G021700--Sobic001G308600 Sobic004G323000 Sobic004G323000 Sobic010G021700--Sobic004G323000 Sobic002G391200--Sobic010G021700 Sobic002G391200--Sobic001G301400 Sobic002G391200--Sobic002G307900 Sobic002G391200--Sobic009G096300 Sobic002G391200--Sobic001G464300 Sobic002G391200--Sobic010G174100 Sobic002G082700 Sobic002G082700 Sobic002G391200--Sobic002G082700 Sobic010G115000 Sobic010G115000 Sobic002G391200--Sobic010G115000 Sobic002G391200--Sobic010G139100 Sobic001G301400--Sobic010G021700 Sobic001G301400--Sobic002G307900 Sobic001G301400--Sobic002G391200 Sobic001G301400--Sobic001G314100 Sobic001G301400--Sobic009G096300 Sobic001G301400--Sobic010G174100 Sobic001G301400--Sobic004G323000 Sobic001G301400--Sobic010G139100 Sobic001G301400--Sobic001G308600 Sobic002G307900--Sobic001G301400 Sobic002G307900--Sobic010G021700 Sobic002G307900--Sobic002G391200 Sobic002G307900--Sobic001G308600 Sobic002G307900--Sobic001G314100 Sobic002G307900--Sobic009G096300 Sobic010G006200 Sobic010G006200 Sobic002G307900--Sobic010G006200 Sobic002G122400 Sobic002G122400 Sobic002G307900--Sobic002G122400 Sobic002G307900--Sobic010G139100 Sobic002G118900 Sobic002G118900 Sobic003G269900--Sobic002G118900 Sobic003G269900--Sobic010G115000 Sobic003G269900--Sobic010G139100 Sobic009G032900 Sobic009G032900 Sobic003G269900--Sobic009G032900 Sobic005G216500 Sobic005G216500 Sobic003G269900--Sobic005G216500 Sobic002G115600 Sobic002G115600 Sobic003G269900--Sobic002G115600 Sobic010G158400 Sobic010G158400 Sobic003G269900--Sobic010G158400 Sobic005G216700 Sobic005G216700 Sobic003G269900--Sobic005G216700 Sobic003G185300 Sobic003G185300 Sobic003G269900--Sobic003G185300 Sobic001G212451--Sobic001G464300 Sobic004G248500 Sobic004G248500 Sobic001G212451--Sobic004G248500 Sobic001G212451--Sobic002G391200 Sobic001G212451--Sobic010G021700 Sobic005G097600 Sobic005G097600 Sobic001G212451--Sobic005G097600 Sobic007G109600 Sobic007G109600 Sobic001G212451--Sobic007G109600 Sobic001G212451--Sobic002G307900 Sobic001G212451--Sobic005G036900 Sobic001G212451--Sobic001G301400 Sobic001G464300--Sobic001G212451 Sobic001G464300--Sobic002G391200 Sobic001G464300--Sobic004G248500 Sobic001G173700 Sobic001G173700 Sobic001G464300--Sobic001G173700 Sobic001G464300--Sobic010G021700 Sobic001G464300--Sobic002G082700 Sobic005G104200 Sobic005G104200 Sobic001G464300--Sobic005G104200 Sobic001G348800 Sobic001G348800 Sobic001G464300--Sobic001G348800 Sobic001G464300--Sobic001G301400 Sobic010G174100--Sobic009G096300 Sobic010G174100--Sobic004G323000 Sobic006G171300 Sobic006G171300 Sobic010G174100--Sobic006G171300 Sobic010G174100--Sobic002G391200 Sobic010G174100--Sobic010G139100 Sobic010G174100--Sobic001G301400 Sobic010G174100--Sobic010G021700 Sobic010G174100--Sobic010G115000 Sobic005G161200 Sobic005G161200 Sobic010G174100--Sobic005G161200 Sobic001G261448 Sobic001G261448 Sobic007G087600--Sobic001G261448 Sobic007G087600--Sobic001G308600 Sobic010G271200 Sobic010G271200 Sobic007G087600--Sobic010G271200 Sobic007G087600--Sobic002G307900 Sobic007G087600--Sobic001G301400 Sobic007G087600--Sobic001G464300 Sobic007G087600--Sobic004G248500 Sobic003G059000 Sobic003G059000 Sobic007G087600--Sobic003G059000 Sobic007G087600--Sobic002G391200
Octagon: transcription factors


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