Gene annotation
Transcriptome id Sobic.005G082100.1
Synonym PME61, Sb05g006610
Functional annotation pectinesterase, putative, expressed
UniProt A0A1B6PQY0
Pfam PF04043 PF01095
Panther DB PTHR31707 PTHR31707:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0004857; enzyme inhibitor activity GO:0005618cell wall


Orthologs (automatic annotation)
TAIR AT3G59010 : pectin methylesterase 61
RAP-DB (Rice) LOC_Os02g54190.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a015604
Brachypodium -
Barley HORVU6Hr1G082990.3 , HORVU6Hr1G082990.4
Wheat TraesCS6A02G343700 , TraesCS6B02G375900 , TraesCS6B02G375900 , TraesCS6D02G324900 , TraesCS6D02G324900 , TraesCS6D02G324600 , TraesCS6A02G343800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G082100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G022600 PME/invertase inhibitor, putative, expressed -
2 Sobic.006G187600 DUF623 domain containing protein, expressed -
3 Sobic.003G239700 proteins of unknown function domain containing protein, expressed -
4 Sobic.001G180300 expressed protein -
5 Sobic.003G201400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
6 Sobic.009G154000 ATOFP18/OFP18, putative, expressed -
7 Sobic.K044200 - -
8 Sobic.001G261440 - -
9 Sobic.010G224800 patellin-5, putative, expressed -
10 Sobic.002G188100 - -
11 Sobic.006G247500 terpene synthase, putative, expressed -
12 Sobic.009G127600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
13 Sobic.001G460700 expressed protein -
14 Sobic.006G172651 - -
15 Sobic.003G109400 - -
16 Sobic.008G028500 expressed protein -
17 Sobic.004G236500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
18 Sobic.008G031600 expressed protein -
19 Sobic.002G156300 - -
20 Sobic.004G128600 salt stress root protein RS1, putative, expressed -


Gene co-expression network
sample Sobic005G082100 Sobic005G082100 Sobic005G022600 Sobic005G022600 Sobic005G082100--Sobic005G022600 Sobic006G187600 Sobic006G187600 Sobic005G082100--Sobic006G187600 Sobic003G239700 Sobic003G239700 Sobic005G082100--Sobic003G239700 Sobic001G180300 Sobic001G180300 Sobic005G082100--Sobic001G180300 Sobic003G201400 Sobic003G201400 Sobic005G082100--Sobic003G201400 Sobic009G154000 Sobic009G154000 Sobic005G082100--Sobic009G154000 SobicK044200 SobicK044200 Sobic005G082100--SobicK044200 Sobic001G261440 Sobic001G261440 Sobic005G082100--Sobic001G261440 Sobic010G224800 Sobic010G224800 Sobic005G082100--Sobic010G224800 Sobic010G045300 Sobic010G045300 Sobic005G022600--Sobic010G045300 Sobic003G081400 Sobic003G081400 Sobic005G022600--Sobic003G081400 Sobic010G068300 Sobic010G068300 Sobic005G022600--Sobic010G068300 Sobic009G039400 Sobic009G039400 Sobic005G022600--Sobic009G039400 Sobic010G029200 Sobic010G029200 Sobic005G022600--Sobic010G029200 Sobic010G208300 Sobic010G208300 Sobic005G022600--Sobic010G208300 Sobic002G188100 Sobic002G188100 Sobic005G022600--Sobic002G188100 Sobic005G022600--Sobic003G201400 Sobic006G167200 Sobic006G167200 Sobic005G022600--Sobic006G167200 Sobic006G187600--Sobic001G180300 Sobic004G227000 Sobic004G227000 Sobic006G187600--Sobic004G227000 Sobic002G425900 Sobic002G425900 Sobic006G187600--Sobic002G425900 Sobic003G092200 Sobic003G092200 Sobic006G187600--Sobic003G092200 Sobic010G178900 Sobic010G178900 Sobic006G187600--Sobic010G178900 Sobic006G187600--Sobic010G224800 Sobic004G197300 Sobic004G197300 Sobic006G187600--Sobic004G197300 Sobic010G114400 Sobic010G114400 Sobic006G187600--Sobic010G114400 Sobic001G441800 Sobic001G441800 Sobic006G187600--Sobic001G441800 Sobic006G166601 Sobic006G166601 Sobic003G239700--Sobic006G166601 Sobic010G200800 Sobic010G200800 Sobic003G239700--Sobic010G200800 Sobic003G008850 Sobic003G008850 Sobic003G239700--Sobic003G008850 Sobic005G076100 Sobic005G076100 Sobic003G239700--Sobic005G076100 Sobic009G152901 Sobic009G152901 Sobic003G239700--Sobic009G152901 Sobic004G354800 Sobic004G354800 Sobic003G239700--Sobic004G354800 Sobic002G326200 Sobic002G326200 Sobic003G239700--Sobic002G326200 Sobic001G120100 Sobic001G120100 Sobic003G239700--Sobic001G120100 Sobic003G136700 Sobic003G136700 Sobic003G239700--Sobic003G136700 Sobic001G180300--Sobic006G187600 Sobic001G180300--Sobic004G227000 Sobic006G278400 Sobic006G278400 Sobic001G180300--Sobic006G278400 Sobic010G014200 Sobic010G014200 Sobic001G180300--Sobic010G014200 Sobic001G180300--Sobic003G092200 Sobic001G180300--Sobic002G425900 Sobic008G163600 Sobic008G163600 Sobic001G180300--Sobic008G163600 Sobic004G329100 Sobic004G329100 Sobic001G180300--Sobic004G329100 Sobic001G180300--Sobic010G178900 Sobic003G201400--Sobic010G114400 Sobic002G156300 Sobic002G156300 Sobic003G201400--Sobic002G156300 Sobic003G201400--Sobic010G224800 Sobic009G031100 Sobic009G031100 Sobic003G201400--Sobic009G031100 Sobic003G109400 Sobic003G109400 Sobic003G201400--Sobic003G109400 Sobic006G197000 Sobic006G197000 Sobic003G201400--Sobic006G197000 Sobic007G001300 Sobic007G001300 Sobic003G201400--Sobic007G001300 Sobic006G172651 Sobic006G172651 Sobic003G201400--Sobic006G172651 Sobic003G201400--Sobic003G081400 Sobic009G154000--SobicK044200 Sobic009G154000--Sobic002G425900 Sobic004G128600 Sobic004G128600 Sobic009G154000--Sobic004G128600 Sobic009G154000--Sobic010G114400 Sobic004G330400 Sobic004G330400 Sobic009G154000--Sobic004G330400 Sobic009G154000--Sobic010G224800 Sobic002G284800 Sobic002G284800 Sobic009G154000--Sobic002G284800 Sobic001G255700 Sobic001G255700 Sobic009G154000--Sobic001G255700 Sobic003G368150 Sobic003G368150 Sobic009G154000--Sobic003G368150 SobicK044200--Sobic002G425900 SobicK044200--Sobic009G154000 SobicK044200--Sobic004G330400 SobicK044200--Sobic003G109400 SobicK044200--Sobic004G354800 SobicK044200--Sobic001G255700 Sobic009G163500 Sobic009G163500 SobicK044200--Sobic009G163500 SobicK044200--Sobic002G284800 SobicK044200--Sobic010G224800 Sobic001G261440--Sobic006G172651 Sobic001G261440--Sobic003G109400 Sobic001G145300 Sobic001G145300 Sobic001G261440--Sobic001G145300 Sobic002G206200 Sobic002G206200 Sobic001G261440--Sobic002G206200 Sobic001G261440--Sobic003G136700 Sobic001G261440--Sobic002G156300 Sobic001G261440--Sobic010G114400 Sobic001G261440--Sobic010G224800 Sobic001G261440--Sobic004G354800 Sobic010G224800--Sobic010G114400 Sobic010G224800--Sobic007G001300 Sobic010G224800--Sobic003G109400 Sobic010G224800--Sobic002G156300 Sobic010G224800--Sobic009G031100 Sobic010G224800--Sobic002G425900 Sobic003G105300 Sobic003G105300 Sobic010G224800--Sobic003G105300 Sobic010G224800--Sobic004G197300 Sobic010G224800--Sobic009G163500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.