Gene annotation
Transcriptome id Sobic.005G107800.3,Sobic.005G107800.4,Sobic.005G107800.2,Sobic.005G107800.5
Synonym CHS, ATCHS, TT4, Sb05g010090
Functional annotation chalcone synthase, putative, expressed
UniProt A0A1B6PRK2 , A0A1Z5RIF5
Pfam PF08541 PF08392
Panther DB PTHR11877 PTHR11877:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0016020membrane GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G13930 : Chalcone and stilbene synthase family protein
RAP-DB (Rice) LOC_Os11g35930.1 : chalcone synthase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G368600 terpene synthase, putative, expressed -
2 Sobic.006G197100 DNA binding protein, putative, expressed -
3 Sobic.007G030501 - -
4 Sobic.004G348400 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
5 Sobic.001G500000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G287100 flavin-containing monooxygenase family protein, putative, expressed -
7 Sobic.001G481400 similar to AP2 domain containing protein(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@similar to AP2 domain containing protein(PubMedID : 24655390)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
8 Sobic.003G062600 limonoid UDP-glucosyltransferase, putative, expressed -
9 Sobic.003G011600 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed K00606: 3-methyl-2-oxobutanoate hydroxymethyltransferase
10 Sobic.003G256500 heavy metal-associated domain containing protein, expressed -
11 Sobic.002G042200 gibberellin receptor GID1L2, putative, expressed -
12 Sobic.009G170700 bet v I allergen family protein, putative, expressed K14496: abscisic acid receptor PYR/PYL family
13 Sobic.004G349125 - -
14 Sobic.006G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.004G310200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@receptor-like protein kinase like protein, putative, expressed -
16 Sobic.004G042000 apoptosis-inducing factor 2, putative, expressed -
17 Sobic.006G044100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
18 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.004G046200 sulfotransferase domain containing protein, expressed -
20 Sobic.009G033300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic005G107800 Sobic005G107800 Sobic003G368600 Sobic003G368600 Sobic005G107800--Sobic003G368600 Sobic006G197100 Sobic006G197100 Sobic005G107800--Sobic006G197100 Sobic007G030501 Sobic007G030501 Sobic005G107800--Sobic007G030501 Sobic004G348400 Sobic004G348400 Sobic005G107800--Sobic004G348400 Sobic001G500000 Sobic001G500000 Sobic005G107800--Sobic001G500000 Sobic002G287100 Sobic002G287100 Sobic005G107800--Sobic002G287100 Sobic001G481400 Sobic001G481400 Sobic005G107800--Sobic001G481400 Sobic003G062600 Sobic003G062600 Sobic005G107800--Sobic003G062600 Sobic003G011600 Sobic003G011600 Sobic005G107800--Sobic003G011600 Sobic003G368600--Sobic006G197100 Sobic003G368600--Sobic005G107800 Sobic003G368600--Sobic004G348400 Sobic001G147900 Sobic001G147900 Sobic003G368600--Sobic001G147900 Sobic002G042200 Sobic002G042200 Sobic003G368600--Sobic002G042200 Sobic003G368600--Sobic003G011600 Sobic006G243600 Sobic006G243600 Sobic003G368600--Sobic006G243600 Sobic002G003800 Sobic002G003800 Sobic003G368600--Sobic002G003800 Sobic003G368600--Sobic007G030501 Sobic006G197100--Sobic002G003800 Sobic004G042000 Sobic004G042000 Sobic006G197100--Sobic004G042000 Sobic004G349125 Sobic004G349125 Sobic006G197100--Sobic004G349125 Sobic001G416200 Sobic001G416200 Sobic006G197100--Sobic001G416200 Sobic004G202400 Sobic004G202400 Sobic006G197100--Sobic004G202400 Sobic001G264000 Sobic001G264000 Sobic006G197100--Sobic001G264000 Sobic003G311800 Sobic003G311800 Sobic006G197100--Sobic003G311800 Sobic006G197100--Sobic002G042200 Sobic006G197100--Sobic003G368600 Sobic007G176100 Sobic007G176100 Sobic007G030501--Sobic007G176100 Sobic007G176000 Sobic007G176000 Sobic007G030501--Sobic007G176000 Sobic007G030501--Sobic006G197100 Sobic007G030501--Sobic003G368600 Sobic007G030501--Sobic004G349125 Sobic004G139300 Sobic004G139300 Sobic007G030501--Sobic004G139300 Sobic002G261300 Sobic002G261300 Sobic007G030501--Sobic002G261300 Sobic010G252500 Sobic010G252500 Sobic007G030501--Sobic010G252500 Sobic007G030501--Sobic002G042200 Sobic004G348400--Sobic003G011600 Sobic003G366600 Sobic003G366600 Sobic004G348400--Sobic003G366600 Sobic004G348400--Sobic003G368600 Sobic002G247600 Sobic002G247600 Sobic004G348400--Sobic002G247600 Sobic010G185000 Sobic010G185000 Sobic004G348400--Sobic010G185000 Sobic002G375400 Sobic002G375400 Sobic004G348400--Sobic002G375400 Sobic004G176600 Sobic004G176600 Sobic004G348400--Sobic004G176600 Sobic006G044100 Sobic006G044100 Sobic004G348400--Sobic006G044100 Sobic004G348400--Sobic006G243600 Sobic003G084400 Sobic003G084400 Sobic001G500000--Sobic003G084400 Sobic001G500000--Sobic002G287100 Sobic001G500000--Sobic001G481400 Sobic009G240600 Sobic009G240600 Sobic001G500000--Sobic009G240600 Sobic004G046200 Sobic004G046200 Sobic001G500000--Sobic004G046200 Sobic001G367600 Sobic001G367600 Sobic001G500000--Sobic001G367600 Sobic009G111000 Sobic009G111000 Sobic001G500000--Sobic009G111000 Sobic001G231700 Sobic001G231700 Sobic001G500000--Sobic001G231700 Sobic006G103000 Sobic006G103000 Sobic001G500000--Sobic006G103000 Sobic002G287100--Sobic001G500000 Sobic008G186100 Sobic008G186100 Sobic002G287100--Sobic008G186100 Sobic001G476500 Sobic001G476500 Sobic002G287100--Sobic001G476500 Sobic002G287100--Sobic009G240600 Sobic009G033300 Sobic009G033300 Sobic002G287100--Sobic009G033300 Sobic002G287100--Sobic001G481400 Sobic009G183400 Sobic009G183400 Sobic002G287100--Sobic009G183400 Sobic010G029700 Sobic010G029700 Sobic002G287100--Sobic010G029700 Sobic006G092500 Sobic006G092500 Sobic002G287100--Sobic006G092500 Sobic001G481400--Sobic009G240600 Sobic001G481400--Sobic001G500000 Sobic001G481400--Sobic001G231700 Sobic001G481400--Sobic001G476500 Sobic001G481400--Sobic004G046200 Sobic003G417800 Sobic003G417800 Sobic001G481400--Sobic003G417800 Sobic001G481400--Sobic006G044100 Sobic001G481400--Sobic002G287100 Sobic006G277600 Sobic006G277600 Sobic001G481400--Sobic006G277600 Sobic003G062600--Sobic003G417800 Sobic003G437200 Sobic003G437200 Sobic003G062600--Sobic003G437200 Sobic001G119400 Sobic001G119400 Sobic003G062600--Sobic001G119400 Sobic004G107700 Sobic004G107700 Sobic003G062600--Sobic004G107700 Sobic003G062600--Sobic009G183400 Sobic003G062600--Sobic006G044100 Sobic005G183100 Sobic005G183100 Sobic003G062600--Sobic005G183100 Sobic003G255200 Sobic003G255200 Sobic003G062600--Sobic003G255200 Sobic003G062600--Sobic004G176600 Sobic003G011600--Sobic004G348400 Sobic003G011600--Sobic003G368600 Sobic003G011600--Sobic006G044100 Sobic001G082600 Sobic001G082600 Sobic003G011600--Sobic001G082600 Sobic003G011600--Sobic004G176600 Sobic003G011600--Sobic004G046200 Sobic003G079400 Sobic003G079400 Sobic003G011600--Sobic003G079400 Sobic003G011600--Sobic006G197100 Sobic003G255500 Sobic003G255500 Sobic003G011600--Sobic003G255500
Octagon: transcription factors


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