Gene annotation
Transcriptome id Sobic.005G179400.1
Synonym Sb05g023870
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5Y5W9
Pfam PF14259 PF00076
Panther DB PTHR24012 PTHR24012:SF397
NCBI CDD KOG0130; RNA-binding protein RBM8/Tsunagi (RRM superfamily)
KEGG Orthology K12741; heterogeneous nuclear ribonucleoprotein A1/A3
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G56860 : UBP1-associated protein 2A
RAP-DB (Rice) LOC_Os11g39030.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G153500 glutaredoxin, putative, expressed -
2 Sobic.010G009700 OsFBX182 - F-box domain containing protein, expressed -
3 Sobic.003G256300 transcription factor Dp, putative, expressed -
4 Sobic.005G138800 expressed protein -
5 Sobic.004G298600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
6 Sobic.004G241300 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
7 Sobic.009G125800 expressed protein -
8 Sobic.005G020600 Mad3/BUB1 homology region 1 domain containing protein, expressed -
9 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
10 Sobic.007G146200 pectinesterase, putative, expressed K01051: pectinesterase
11 Sobic.005G008850 - -
12 Sobic.002G172401 - K07904: Ras-related protein Rab-11A
13 Sobic.009G214500 IQ calmodulin-binding motif domain containing protein, expressed -
14 Sobic.004G071700 expressed protein -
15 Sobic.010G157200 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
16 Sobic.010G215400 expressed protein -
17 Sobic.001G385300 auxin-independent growth promoter protein, putative, expressed -
18 Sobic.003G376900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed -
19 Sobic.002G299500 expressed protein -
20 Sobic.009G080600 expressed protein -


Gene co-expression network
sample Sobic005G179400 Sobic005G179400 Sobic001G153500 Sobic001G153500 Sobic005G179400--Sobic001G153500 Sobic010G009700 Sobic010G009700 Sobic005G179400--Sobic010G009700 Sobic003G256300 Sobic003G256300 Sobic005G179400--Sobic003G256300 Sobic005G138800 Sobic005G138800 Sobic005G179400--Sobic005G138800 Sobic004G298600 Sobic004G298600 Sobic005G179400--Sobic004G298600 Sobic004G241300 Sobic004G241300 Sobic005G179400--Sobic004G241300 Sobic009G125800 Sobic009G125800 Sobic005G179400--Sobic009G125800 Sobic005G020600 Sobic005G020600 Sobic005G179400--Sobic005G020600 Sobic001G131900 Sobic001G131900 Sobic005G179400--Sobic001G131900 Sobic001G153500--Sobic003G256300 Sobic001G207900 Sobic001G207900 Sobic001G153500--Sobic001G207900 Sobic002G061500 Sobic002G061500 Sobic001G153500--Sobic002G061500 Sobic009G180600 Sobic009G180600 Sobic001G153500--Sobic009G180600 Sobic010G215400 Sobic010G215400 Sobic001G153500--Sobic010G215400 Sobic004G071700 Sobic004G071700 Sobic001G153500--Sobic004G071700 Sobic004G008500 Sobic004G008500 Sobic001G153500--Sobic004G008500 Sobic004G336800 Sobic004G336800 Sobic001G153500--Sobic004G336800 Sobic004G264100 Sobic004G264100 Sobic001G153500--Sobic004G264100 Sobic010G009700--Sobic004G298600 Sobic010G009700--Sobic001G131900 Sobic010G038200 Sobic010G038200 Sobic010G009700--Sobic010G038200 Sobic006G189000 Sobic006G189000 Sobic010G009700--Sobic006G189000 Sobic005G060100 Sobic005G060100 Sobic010G009700--Sobic005G060100 Sobic009G054400 Sobic009G054400 Sobic010G009700--Sobic009G054400 Sobic002G322700 Sobic002G322700 Sobic010G009700--Sobic002G322700 Sobic002G151500 Sobic002G151500 Sobic010G009700--Sobic002G151500 Sobic007G102300 Sobic007G102300 Sobic010G009700--Sobic007G102300 Sobic003G256300--Sobic004G071700 Sobic003G256300--Sobic001G153500 Sobic003G256300--Sobic010G215400 Sobic003G256300--Sobic004G264100 Sobic003G216400 Sobic003G216400 Sobic003G256300--Sobic003G216400 Sobic004G079600 Sobic004G079600 Sobic003G256300--Sobic004G079600 Sobic003G256300--Sobic001G207900 Sobic001G174400 Sobic001G174400 Sobic003G256300--Sobic001G174400 Sobic001G135900 Sobic001G135900 Sobic003G256300--Sobic001G135900 Sobic008G171900 Sobic008G171900 Sobic005G138800--Sobic008G171900 Sobic005G138800--Sobic005G020600 Sobic005G138800--Sobic004G241300 Sobic001G435700 Sobic001G435700 Sobic005G138800--Sobic001G435700 Sobic008G156600 Sobic008G156600 Sobic005G138800--Sobic008G156600 Sobic009G163100 Sobic009G163100 Sobic005G138800--Sobic009G163100 Sobic003G376900 Sobic003G376900 Sobic005G138800--Sobic003G376900 Sobic004G038400 Sobic004G038400 Sobic005G138800--Sobic004G038400 Sobic002G172401 Sobic002G172401 Sobic005G138800--Sobic002G172401 Sobic001G385300 Sobic001G385300 Sobic004G298600--Sobic001G385300 Sobic004G298600--Sobic001G131900 Sobic003G293400 Sobic003G293400 Sobic004G298600--Sobic003G293400 Sobic004G026600 Sobic004G026600 Sobic004G298600--Sobic004G026600 Sobic004G298600--Sobic005G060100 Sobic001G308500 Sobic001G308500 Sobic004G298600--Sobic001G308500 Sobic001G433600 Sobic001G433600 Sobic004G298600--Sobic001G433600 Sobic007G105700 Sobic007G105700 Sobic004G298600--Sobic007G105700 Sobic003G352900 Sobic003G352900 Sobic004G298600--Sobic003G352900 Sobic004G241300--Sobic008G171900 Sobic004G241300--Sobic008G156600 Sobic004G241300--Sobic009G163100 Sobic003G423700 Sobic003G423700 Sobic004G241300--Sobic003G423700 Sobic004G241300--Sobic001G435700 Sobic004G241300--Sobic005G020600 Sobic002G420100 Sobic002G420100 Sobic004G241300--Sobic002G420100 Sobic010G253200 Sobic010G253200 Sobic004G241300--Sobic010G253200 Sobic004G241300--Sobic002G172401 Sobic009G136000 Sobic009G136000 Sobic009G125800--Sobic009G136000 Sobic004G117400 Sobic004G117400 Sobic009G125800--Sobic004G117400 Sobic001G082800 Sobic001G082800 Sobic009G125800--Sobic001G082800 Sobic009G131200 Sobic009G131200 Sobic009G125800--Sobic009G131200 Sobic002G390800 Sobic002G390800 Sobic009G125800--Sobic002G390800 Sobic009G125800--Sobic010G009700 Sobic007G146200 Sobic007G146200 Sobic009G125800--Sobic007G146200 Sobic008G188800 Sobic008G188800 Sobic009G125800--Sobic008G188800 Sobic009G214500 Sobic009G214500 Sobic009G125800--Sobic009G214500 Sobic005G020600--Sobic009G163100 Sobic002G299500 Sobic002G299500 Sobic005G020600--Sobic002G299500 Sobic005G020600--Sobic008G156600 Sobic001G072000 Sobic001G072000 Sobic005G020600--Sobic001G072000 Sobic009G202000 Sobic009G202000 Sobic005G020600--Sobic009G202000 Sobic005G020600--Sobic008G171900 Sobic001G432200 Sobic001G432200 Sobic005G020600--Sobic001G432200 Sobic001G322400 Sobic001G322400 Sobic005G020600--Sobic001G322400 Sobic001G112600 Sobic001G112600 Sobic005G020600--Sobic001G112600 Sobic001G131900--Sobic003G293400 Sobic001G131900--Sobic003G352900 Sobic001G131900--Sobic004G038400 Sobic001G076600 Sobic001G076600 Sobic001G131900--Sobic001G076600 Sobic001G131900--Sobic001G385300 Sobic005G045800 Sobic005G045800 Sobic001G131900--Sobic005G045800 Sobic001G131900--Sobic004G298600 Sobic001G131900--Sobic002G420100 Sobic007G144100 Sobic007G144100 Sobic001G131900--Sobic007G144100
Octagon: transcription factors


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