Gene annotation
Transcriptome id Sobic.005G189500.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6PTG6
Pfam PF01097
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006952; defense response


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os02g07495.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G015000 DEF3 - Defensin and Defensin-like DEFL family, expressed -
2 Sobic.007G125800 expressed protein -
3 Sobic.007G048300 berberine and berberine like domain containing protein, expressed -
4 Sobic.009G019550 - -
5 Sobic.010G035100 AP2 domain containing protein, expressed -
6 Sobic.002G346700 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.003G092400 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
8 Sobic.003G020700 - -
9 Sobic.002G258500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
10 Sobic.003G231000 SbDFR2 expression was not detectable in the seedlings of either sorghum cultivar under our experimental conditions.(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
11 Sobic.009G180700 transcription factor, putative, expressed K14431: transcription factor TGA
12 Sobic.010G237400 ZmEBE-1 protein, putative, expressed -
13 Sobic.004G316000 DEFL74 - Defensin and Defensin-like DEFL family, expressed -
14 Sobic.009G059800 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -
15 Sobic.003G369800 - -
16 Sobic.005G077750 - -
17 Sobic.009G111301 - -
18 Sobic.002G102800 PME/invertase inhibitor, putative, expressed -
19 Sobic.007G218400 - -
20 Sobic.009G059932 - -


Gene co-expression network
sample Sobic005G189500 Sobic005G189500 Sobic004G015000 Sobic004G015000 Sobic005G189500--Sobic004G015000 Sobic007G125800 Sobic007G125800 Sobic005G189500--Sobic007G125800 Sobic007G048300 Sobic007G048300 Sobic005G189500--Sobic007G048300 Sobic009G019550 Sobic009G019550 Sobic005G189500--Sobic009G019550 Sobic010G035100 Sobic010G035100 Sobic005G189500--Sobic010G035100 Sobic002G346700 Sobic002G346700 Sobic005G189500--Sobic002G346700 Sobic003G092400 Sobic003G092400 Sobic005G189500--Sobic003G092400 Sobic003G020700 Sobic003G020700 Sobic005G189500--Sobic003G020700 Sobic002G258500 Sobic002G258500 Sobic005G189500--Sobic002G258500 Sobic004G015000--Sobic005G189500 Sobic004G015000--Sobic007G048300 Sobic004G015000--Sobic007G125800 Sobic004G015000--Sobic009G019550 Sobic004G015000--Sobic010G035100 Sobic004G015000--Sobic002G346700 Sobic004G015000--Sobic003G020700 Sobic004G015000--Sobic002G258500 Sobic009G180700 Sobic009G180700 Sobic004G015000--Sobic009G180700 Sobic007G125800--Sobic004G015000 Sobic007G125800--Sobic005G189500 Sobic007G125800--Sobic007G048300 Sobic007G125800--Sobic009G019550 Sobic007G125800--Sobic002G346700 Sobic007G125800--Sobic010G035100 Sobic007G125800--Sobic002G258500 Sobic007G125800--Sobic003G020700 Sobic004G316000 Sobic004G316000 Sobic007G125800--Sobic004G316000 Sobic007G048300--Sobic004G015000 Sobic007G048300--Sobic005G189500 Sobic007G048300--Sobic007G125800 Sobic005G009900 Sobic005G009900 Sobic007G048300--Sobic005G009900 Sobic001G419400 Sobic001G419400 Sobic007G048300--Sobic001G419400 Sobic003G398600 Sobic003G398600 Sobic007G048300--Sobic003G398600 Sobic007G048300--Sobic009G019550 Sobic007G048300--Sobic010G035100 Sobic002G331900 Sobic002G331900 Sobic007G048300--Sobic002G331900 Sobic010G237400 Sobic010G237400 Sobic009G019550--Sobic010G237400 Sobic003G369800 Sobic003G369800 Sobic009G019550--Sobic003G369800 Sobic009G019550--Sobic002G346700 Sobic009G019550--Sobic004G316000 Sobic004G056500 Sobic004G056500 Sobic009G019550--Sobic004G056500 Sobic002G102800 Sobic002G102800 Sobic009G019550--Sobic002G102800 Sobic010G144600 Sobic010G144600 Sobic009G019550--Sobic010G144600 Sobic009G059800 Sobic009G059800 Sobic009G019550--Sobic009G059800 Sobic009G019550--Sobic002G258500 Sobic010G035100--Sobic002G258500 Sobic010G035100--Sobic002G346700 Sobic006G006400 Sobic006G006400 Sobic010G035100--Sobic006G006400 Sobic010G035100--Sobic004G316000 Sobic010G035100--Sobic009G019550 Sobic002G023500 Sobic002G023500 Sobic010G035100--Sobic002G023500 Sobic006G239600 Sobic006G239600 Sobic010G035100--Sobic006G239600 Sobic001G123650 Sobic001G123650 Sobic010G035100--Sobic001G123650 Sobic002G346700--Sobic004G316000 Sobic002G346700--Sobic002G258500 Sobic002G346700--Sobic002G023500 Sobic010G130900 Sobic010G130900 Sobic002G346700--Sobic010G130900 Sobic002G066350 Sobic002G066350 Sobic002G346700--Sobic002G066350 Sobic007G014300 Sobic007G014300 Sobic002G346700--Sobic007G014300 Sobic002G346700--Sobic001G123650 Sobic007G121200 Sobic007G121200 Sobic003G092400--Sobic007G121200 Sobic001G456000 Sobic001G456000 Sobic003G092400--Sobic001G456000 Sobic004G254300 Sobic004G254300 Sobic003G092400--Sobic004G254300 Sobic002G344201 Sobic002G344201 Sobic003G092400--Sobic002G344201 Sobic003G092400--Sobic009G019550 Sobic002G268300 Sobic002G268300 Sobic003G092400--Sobic002G268300 Sobic003G243100 Sobic003G243100 Sobic003G092400--Sobic003G243100 Sobic003G092400--Sobic010G237400 Sobic001G106500 Sobic001G106500 Sobic003G092400--Sobic001G106500 Sobic003G020700--Sobic002G346700 Sobic003G020700--Sobic002G258500 Sobic003G020700--Sobic009G019550 Sobic003G020700--Sobic004G316000 Sobic003G231000 Sobic003G231000 Sobic003G020700--Sobic003G231000 Sobic003G020700--Sobic002G023500 Sobic003G020700--Sobic010G130900 Sobic003G020700--Sobic007G125800 Sobic003G020700--Sobic007G014300 Sobic002G258500--Sobic004G316000 Sobic002G258500--Sobic002G023500 Sobic002G258500--Sobic010G130900 Sobic002G258500--Sobic002G346700 Sobic002G258500--Sobic007G014300 Sobic002G258500--Sobic001G123650
Octagon: transcription factors


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