Gene annotation
Transcriptome id Sobic.007G048300.1
Synonym Sb07g003930
Functional annotation berberine and berberine like domain containing protein, expressed
UniProt A0A1Z5R877
Pfam PF08031 PF01565
Panther DB PTHR32448 PTHR32448:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT5G44400 : FAD-binding Berberine family protein
RAP-DB (Rice) LOC_Os08g06170.1 : berberine and berberine like domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048836 , Zm00025a030076 , Zm00025a030074
Brachypodium KQJ81772 , PNT66736
Barley HORVU7Hr1G026630.1 , HORVU7Hr1G026630.6 , HORVU7Hr1G026630.4 , HORVU7Hr1G026630.5 , HORVU7Hr1G026630.2 , HORVU7Hr1G026630.3
Wheat TraesCS7B02G026000 , TraesCS3A02G111600 , TraesCS7A02G354100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G015000 DEF3 - Defensin and Defensin-like DEFL family, expressed -
2 Sobic.005G189500 expressed protein -
3 Sobic.007G125800 expressed protein -
4 Sobic.005G009900 pectinesterase, putative, expressed -
5 Sobic.001G419400 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
6 Sobic.003G398600 OsMADS98 - MADS-box family gene with M-beta type-box, expressed -
7 Sobic.009G019550 - -
8 Sobic.010G035100 AP2 domain containing protein, expressed -
9 Sobic.002G331900 CRP8 - Cysteine-rich family protein precursor, expressed -
10 Sobic.002G346700 GDSL-like lipase/acylhydrolase, putative, expressed -
11 Sobic.003G020700 - -
12 Sobic.009G180700 transcription factor, putative, expressed K14431: transcription factor TGA
13 Sobic.002G258500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
14 Sobic.003G092400 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
15 Sobic.009G111301 - -
16 Sobic.003G231000 SbDFR2 expression was not detectable in the seedlings of either sorghum cultivar under our experimental conditions.(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
17 Sobic.004G029200 - -
18 Sobic.005G077750 - -
19 Sobic.005G141200 plant protein of unknown function domain containing protein, expressed -
20 Sobic.004G316000 DEFL74 - Defensin and Defensin-like DEFL family, expressed -


Gene co-expression network
sample Sobic007G048300 Sobic007G048300 Sobic004G015000 Sobic004G015000 Sobic007G048300--Sobic004G015000 Sobic005G189500 Sobic005G189500 Sobic007G048300--Sobic005G189500 Sobic007G125800 Sobic007G125800 Sobic007G048300--Sobic007G125800 Sobic005G009900 Sobic005G009900 Sobic007G048300--Sobic005G009900 Sobic001G419400 Sobic001G419400 Sobic007G048300--Sobic001G419400 Sobic003G398600 Sobic003G398600 Sobic007G048300--Sobic003G398600 Sobic009G019550 Sobic009G019550 Sobic007G048300--Sobic009G019550 Sobic010G035100 Sobic010G035100 Sobic007G048300--Sobic010G035100 Sobic002G331900 Sobic002G331900 Sobic007G048300--Sobic002G331900 Sobic004G015000--Sobic005G189500 Sobic004G015000--Sobic007G048300 Sobic004G015000--Sobic007G125800 Sobic004G015000--Sobic009G019550 Sobic004G015000--Sobic010G035100 Sobic002G346700 Sobic002G346700 Sobic004G015000--Sobic002G346700 Sobic003G020700 Sobic003G020700 Sobic004G015000--Sobic003G020700 Sobic002G258500 Sobic002G258500 Sobic004G015000--Sobic002G258500 Sobic009G180700 Sobic009G180700 Sobic004G015000--Sobic009G180700 Sobic005G189500--Sobic004G015000 Sobic005G189500--Sobic007G125800 Sobic005G189500--Sobic007G048300 Sobic005G189500--Sobic009G019550 Sobic005G189500--Sobic010G035100 Sobic005G189500--Sobic002G346700 Sobic003G092400 Sobic003G092400 Sobic005G189500--Sobic003G092400 Sobic005G189500--Sobic003G020700 Sobic005G189500--Sobic002G258500 Sobic007G125800--Sobic004G015000 Sobic007G125800--Sobic005G189500 Sobic007G125800--Sobic007G048300 Sobic007G125800--Sobic009G019550 Sobic007G125800--Sobic002G346700 Sobic007G125800--Sobic010G035100 Sobic007G125800--Sobic002G258500 Sobic007G125800--Sobic003G020700 Sobic004G316000 Sobic004G316000 Sobic007G125800--Sobic004G316000 Sobic004G029200 Sobic004G029200 Sobic005G009900--Sobic004G029200 Sobic003G279000 Sobic003G279000 Sobic005G009900--Sobic003G279000 Sobic005G009900--Sobic002G331900 Sobic010G081300 Sobic010G081300 Sobic005G009900--Sobic010G081300 Sobic005G009900--Sobic007G048300 Sobic001G494700 Sobic001G494700 Sobic005G009900--Sobic001G494700 Sobic008G130350 Sobic008G130350 Sobic005G009900--Sobic008G130350 Sobic001G129750 Sobic001G129750 Sobic005G009900--Sobic001G129750 Sobic003G020900 Sobic003G020900 Sobic005G009900--Sobic003G020900 Sobic001G419400--Sobic007G048300 Sobic001G419400--Sobic004G015000 Sobic001G419400--Sobic005G009900 Sobic001G419400--Sobic003G398600 Sobic001G419400--Sobic005G189500 Sobic001G419400--Sobic007G125800 Sobic001G419400--Sobic010G081300 Sobic001G419400--Sobic002G331900 Sobic001G419400--Sobic004G029200 Sobic003G398600--Sobic010G081300 Sobic003G398600--Sobic005G009900 Sobic003G398600--Sobic007G048300 Sobic003G398600--Sobic001G419400 Sobic003G398600--Sobic004G029200 Sobic003G398600--Sobic004G015000 Sobic003G398600--Sobic005G189500 Sobic003G398600--Sobic002G331900 Sobic003G066600 Sobic003G066600 Sobic003G398600--Sobic003G066600 Sobic010G237400 Sobic010G237400 Sobic009G019550--Sobic010G237400 Sobic003G369800 Sobic003G369800 Sobic009G019550--Sobic003G369800 Sobic009G019550--Sobic002G346700 Sobic009G019550--Sobic004G316000 Sobic004G056500 Sobic004G056500 Sobic009G019550--Sobic004G056500 Sobic002G102800 Sobic002G102800 Sobic009G019550--Sobic002G102800 Sobic010G144600 Sobic010G144600 Sobic009G019550--Sobic010G144600 Sobic009G059800 Sobic009G059800 Sobic009G019550--Sobic009G059800 Sobic009G019550--Sobic002G258500 Sobic010G035100--Sobic002G258500 Sobic010G035100--Sobic002G346700 Sobic006G006400 Sobic006G006400 Sobic010G035100--Sobic006G006400 Sobic010G035100--Sobic004G316000 Sobic010G035100--Sobic009G019550 Sobic002G023500 Sobic002G023500 Sobic010G035100--Sobic002G023500 Sobic006G239600 Sobic006G239600 Sobic010G035100--Sobic006G239600 Sobic001G123650 Sobic001G123650 Sobic010G035100--Sobic001G123650 Sobic002G331900--Sobic005G009900 Sobic002G331900--Sobic004G029200 Sobic003G284400 Sobic003G284400 Sobic002G331900--Sobic003G284400 Sobic002G331900--Sobic003G279000 Sobic002G331900--Sobic007G048300 Sobic002G331900--Sobic001G494700 Sobic002G331900--Sobic004G015000 Sobic002G331900--Sobic010G081300 Sobic002G331900--Sobic003G398600
Octagon: transcription factors


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