Gene annotation
Transcriptome id Sobic.005G231400.2,Sobic.005G231400.3
Synonym 1, CYCD7, Sb05g027860
Functional annotation cyclin, putative, expressed
UniProt A0A1Z5RK74 , A0A1Z5RK60
Pfam PF02984 PF00134
Panther DB PTHR10177 PTHR10177:SF215
NCBI CDD -
KEGG Orthology K18813; cyclin D7, plant
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT1G70210 : CYCLIN D1;1
RAP-DB (Rice) LOC_Os11g47950.1 : cyclin, putative, expressed
MaizeGDB (Corn) Zm00025a029071
Brachypodium KQJ93820 , PNT66081
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G187400 - -
2 Sobic.006G189400 expressed protein -
3 Sobic.001G345200 OsFBX94 - F-box domain containing protein, expressed -
4 Sobic.008G170400 expressed protein -
5 Sobic.005G098400 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsIAA27 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
6 Sobic.001G488400 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659850)@bHLH family protein, putative, expressed -
7 Sobic.003G418300 protein kinase, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
8 Sobic.003G338200 receptor-like protein kinase precursor, putative, expressed -
9 Sobic.007G094200 expressed protein -
10 Sobic.003G309400 OsSub4 - Putative Subtilisin homologue, expressed -
11 Sobic.003G116100 pectinesterase, putative, expressed K01051: pectinesterase
12 Sobic.002G072700 carboxyl-terminal peptidase, putative, expressed -
13 Sobic.004G168600 heat shock protein-related, putative, expressed -
14 Sobic.002G067500 ATPase, putative, expressed K08900: mitochondrial chaperone BCS1
15 Sobic.003G300400 expressed protein -
16 Sobic.005G091000 receptor protein kinase CLAVATA1 precursor, putative, expressed -
17 Sobic.009G254500 protein kinase, putative, expressed -
18 Sobic.003G277200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
19 Sobic.007G012800 Leucine Rich Repeat family protein, expressed -
20 Sobic.007G111700 glutathione S-transferase, C-terminal domain containing protein, expressed -


Gene co-expression network
sample Sobic005G231400 Sobic005G231400 Sobic008G187400 Sobic008G187400 Sobic005G231400--Sobic008G187400 Sobic006G189400 Sobic006G189400 Sobic005G231400--Sobic006G189400 Sobic001G345200 Sobic001G345200 Sobic005G231400--Sobic001G345200 Sobic008G170400 Sobic008G170400 Sobic005G231400--Sobic008G170400 Sobic005G098400 Sobic005G098400 Sobic005G231400--Sobic005G098400 Sobic001G488400 Sobic001G488400 Sobic005G231400--Sobic001G488400 Sobic003G418300 Sobic003G418300 Sobic005G231400--Sobic003G418300 Sobic003G338200 Sobic003G338200 Sobic005G231400--Sobic003G338200 Sobic007G094200 Sobic007G094200 Sobic005G231400--Sobic007G094200 Sobic008G187400--Sobic007G094200 Sobic001G438500 Sobic001G438500 Sobic008G187400--Sobic001G438500 Sobic009G254500 Sobic009G254500 Sobic008G187400--Sobic009G254500 Sobic008G187400--Sobic001G488400 Sobic002G011000 Sobic002G011000 Sobic008G187400--Sobic002G011000 Sobic008G187400--Sobic005G231400 Sobic003G300400 Sobic003G300400 Sobic008G187400--Sobic003G300400 Sobic002G032500 Sobic002G032500 Sobic008G187400--Sobic002G032500 Sobic003G309400 Sobic003G309400 Sobic008G187400--Sobic003G309400 Sobic006G189400--Sobic005G231400 Sobic006G189400--Sobic008G187400 Sobic006G189400--Sobic001G488400 Sobic003G116100 Sobic003G116100 Sobic006G189400--Sobic003G116100 Sobic006G189400--Sobic003G338200 Sobic002G419200 Sobic002G419200 Sobic006G189400--Sobic002G419200 Sobic006G189400--Sobic001G345200 Sobic007G012800 Sobic007G012800 Sobic006G189400--Sobic007G012800 Sobic006G189400--Sobic003G300400 Sobic001G345200--Sobic005G098400 Sobic001G345200--Sobic003G338200 Sobic002G016400 Sobic002G016400 Sobic001G345200--Sobic002G016400 Sobic001G267100 Sobic001G267100 Sobic001G345200--Sobic001G267100 Sobic001G345200--Sobic003G116100 Sobic005G091000 Sobic005G091000 Sobic001G345200--Sobic005G091000 Sobic001G305300 Sobic001G305300 Sobic001G345200--Sobic001G305300 Sobic001G345200--Sobic008G187400 Sobic003G277200 Sobic003G277200 Sobic001G345200--Sobic003G277200 Sobic007G111700 Sobic007G111700 Sobic008G170400--Sobic007G111700 Sobic008G170400--Sobic002G016400 Sobic008G170400--Sobic005G098400 Sobic008G170400--Sobic005G231400 Sobic008G170400--Sobic003G418300 Sobic010G007000 Sobic010G007000 Sobic008G170400--Sobic010G007000 Sobic005G110600 Sobic005G110600 Sobic008G170400--Sobic005G110600 Sobic002G064600 Sobic002G064600 Sobic008G170400--Sobic002G064600 Sobic006G062300 Sobic006G062300 Sobic008G170400--Sobic006G062300 Sobic005G098400--Sobic002G016400 Sobic005G098400--Sobic001G305300 Sobic005G098400--Sobic001G345200 Sobic005G098400--Sobic003G418300 Sobic007G050500 Sobic007G050500 Sobic005G098400--Sobic007G050500 Sobic007G225400 Sobic007G225400 Sobic005G098400--Sobic007G225400 Sobic005G098400--Sobic005G091000 Sobic005G121700 Sobic005G121700 Sobic005G098400--Sobic005G121700 Sobic005G098400--Sobic008G170400 Sobic005G188500 Sobic005G188500 Sobic001G488400--Sobic005G188500 Sobic010G027700 Sobic010G027700 Sobic001G488400--Sobic010G027700 Sobic006G044200 Sobic006G044200 Sobic001G488400--Sobic006G044200 Sobic001G488400--Sobic008G187400 Sobic001G488400--Sobic001G438500 Sobic001G488400--Sobic003G116100 Sobic007G189400 Sobic007G189400 Sobic001G488400--Sobic007G189400 Sobic002G068400 Sobic002G068400 Sobic001G488400--Sobic002G068400 Sobic008G035400 Sobic008G035400 Sobic001G488400--Sobic008G035400 Sobic003G418300--Sobic002G016400 Sobic003G418300--Sobic005G098400 Sobic003G418300--Sobic001G345200 Sobic003G418300--Sobic003G338200 Sobic003G418300--Sobic008G170400 Sobic003G418300--Sobic007G094200 Sobic003G418300--Sobic005G231400 Sobic010G216600 Sobic010G216600 Sobic003G418300--Sobic010G216600 Sobic003G418300--Sobic008G187400 Sobic003G338200--Sobic002G032500 Sobic003G338200--Sobic002G419200 Sobic003G338200--Sobic003G309400 Sobic004G248100 Sobic004G248100 Sobic003G338200--Sobic004G248100 Sobic003G338200--Sobic001G345200 Sobic003G338200--Sobic003G116100 Sobic003G338200--Sobic007G094200 Sobic003G338200--Sobic003G277200 Sobic003G338200--Sobic003G300400 Sobic007G094200--Sobic002G032500 Sobic002G416400 Sobic002G416400 Sobic007G094200--Sobic002G416400 Sobic008G154700 Sobic008G154700 Sobic007G094200--Sobic008G154700 Sobic003G178500 Sobic003G178500 Sobic007G094200--Sobic003G178500 Sobic004G342000 Sobic004G342000 Sobic007G094200--Sobic004G342000 Sobic007G094200--Sobic010G027700 Sobic007G094200--Sobic001G438500 Sobic004G227900 Sobic004G227900 Sobic007G094200--Sobic004G227900 Sobic006G219100 Sobic006G219100 Sobic007G094200--Sobic006G219100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.