Gene annotation
Transcriptome id Sobic.006G190000.1
Synonym DMR6
Functional annotation naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed
UniProt A0A1B6PMR2
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF192
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT5G24530 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os04g49194.1 : naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ84188 , KQJ84187
Barley HORVU0Hr1G005300.7 , HORVU0Hr1G005300.4 , HORVU0Hr1G005300.5 , HORVU0Hr1G005300.2 , HORVU0Hr1G005300.3 , HORVU0Hr1G005300.1 , HORVU0Hr1G005300.8 , HORVU0Hr1G005300.9 , HORVU0Hr1G005300.10 , HORVU0Hr1G005300.12 , HORVU0Hr1G005300.13
Wheat TraesCS5A02G515600 , TraesCS5A02G515600 , TraesCS2D02G392800 , TraesCS4D02G341800 , TraesCS2B02G413000 , TraesCS4B02G346900 , TraesCS2A02G395000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G144400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acetyltransferase, GNAT family, putative, expressed -
2 Sobic.009G067400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G381300 WRKY79, expressed -
4 Sobic.001G319100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
5 Sobic.009G173900 expressed protein -
6 Sobic.004G101000 helix-loop-helix DNA-binding domain containing protein, expressed -
7 Sobic.010G018300 expressed protein -
8 Sobic.001G146400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR16 - Auxin-responsive SAUR gene family member, expressed -
9 Sobic.009G216050 - -
10 Sobic.009G038000 expressed protein -
11 Sobic.001G146500 OsSAUR17 - Auxin-responsive SAUR gene family member, expressed -
12 Sobic.002G418500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY47, expressed -
13 Sobic.009G121600 cytochrome P450 86A2, putative, expressed -
14 Sobic.003G296300 WRKY13, expressed -
15 Sobic.010G210600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
16 Sobic.006G097800 anthocyanin 5-O-glucosyltransferase, putative, expressed -
17 Sobic.005G226100 ZOS11-10 - C2H2 zinc finger protein, expressed -
18 Sobic.010G224600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR26 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
19 Sobic.001G339200 - -
20 Sobic.006G167800 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic006G190000 Sobic006G190000 Sobic001G144400 Sobic001G144400 Sobic006G190000--Sobic001G144400 Sobic009G067400 Sobic009G067400 Sobic006G190000--Sobic009G067400 Sobic001G381300 Sobic001G381300 Sobic006G190000--Sobic001G381300 Sobic001G319100 Sobic001G319100 Sobic006G190000--Sobic001G319100 Sobic009G173900 Sobic009G173900 Sobic006G190000--Sobic009G173900 Sobic004G101000 Sobic004G101000 Sobic006G190000--Sobic004G101000 Sobic010G018300 Sobic010G018300 Sobic006G190000--Sobic010G018300 Sobic001G146400 Sobic001G146400 Sobic006G190000--Sobic001G146400 Sobic009G216050 Sobic009G216050 Sobic006G190000--Sobic009G216050 Sobic001G144400--Sobic006G190000 Sobic006G167800 Sobic006G167800 Sobic001G144400--Sobic006G167800 Sobic002G376000 Sobic002G376000 Sobic001G144400--Sobic002G376000 Sobic006G097800 Sobic006G097800 Sobic001G144400--Sobic006G097800 Sobic001G144400--Sobic010G018300 Sobic003G123300 Sobic003G123300 Sobic001G144400--Sobic003G123300 Sobic001G526000 Sobic001G526000 Sobic001G144400--Sobic001G526000 Sobic010G210600 Sobic010G210600 Sobic001G144400--Sobic010G210600 Sobic002G067000 Sobic002G067000 Sobic001G144400--Sobic002G067000 Sobic009G067400--Sobic010G018300 Sobic009G067400--Sobic009G216050 Sobic009G067400--Sobic001G381300 Sobic009G067400--Sobic001G146400 Sobic004G209500 Sobic004G209500 Sobic009G067400--Sobic004G209500 Sobic009G121600 Sobic009G121600 Sobic009G067400--Sobic009G121600 Sobic005G226100 Sobic005G226100 Sobic009G067400--Sobic005G226100 Sobic005G041000 Sobic005G041000 Sobic009G067400--Sobic005G041000 Sobic002G407200 Sobic002G407200 Sobic009G067400--Sobic002G407200 Sobic001G381300--Sobic005G226100 Sobic005G193600 Sobic005G193600 Sobic001G381300--Sobic005G193600 Sobic008G181801 Sobic008G181801 Sobic001G381300--Sobic008G181801 Sobic006G246200 Sobic006G246200 Sobic001G381300--Sobic006G246200 Sobic001G146500 Sobic001G146500 Sobic001G381300--Sobic001G146500 Sobic009G241500 Sobic009G241500 Sobic001G381300--Sobic009G241500 Sobic001G381300--Sobic009G121600 Sobic003G037100 Sobic003G037100 Sobic001G381300--Sobic003G037100 Sobic006G229500 Sobic006G229500 Sobic001G381300--Sobic006G229500 Sobic001G319100--Sobic009G121600 Sobic001G319100--Sobic009G216050 Sobic001G319100--Sobic006G246200 Sobic005G082700 Sobic005G082700 Sobic001G319100--Sobic005G082700 Sobic008G142100 Sobic008G142100 Sobic001G319100--Sobic008G142100 Sobic001G319100--Sobic004G101000 Sobic001G319100--Sobic009G067400 Sobic001G319100--Sobic006G190000 Sobic001G319100--Sobic001G381300 Sobic009G173900--Sobic006G190000 Sobic003G199600 Sobic003G199600 Sobic009G173900--Sobic003G199600 Sobic007G115500 Sobic007G115500 Sobic009G173900--Sobic007G115500 Sobic009G173900--Sobic001G146400 Sobic006G113000 Sobic006G113000 Sobic009G173900--Sobic006G113000 Sobic010G102150 Sobic010G102150 Sobic009G173900--Sobic010G102150 Sobic009G173900--Sobic010G018300 Sobic010G224600 Sobic010G224600 Sobic009G173900--Sobic010G224600 Sobic009G173900--Sobic001G381300 Sobic001G345400 Sobic001G345400 Sobic004G101000--Sobic001G345400 Sobic004G101000--Sobic009G216050 Sobic003G296300 Sobic003G296300 Sobic004G101000--Sobic003G296300 Sobic009G038000 Sobic009G038000 Sobic004G101000--Sobic009G038000 Sobic004G101000--Sobic002G407200 Sobic010G214200 Sobic010G214200 Sobic004G101000--Sobic010G214200 Sobic001G314800 Sobic001G314800 Sobic004G101000--Sobic001G314800 Sobic001G195100 Sobic001G195100 Sobic004G101000--Sobic001G195100 Sobic003G310500 Sobic003G310500 Sobic004G101000--Sobic003G310500 Sobic002G386200 Sobic002G386200 Sobic010G018300--Sobic002G386200 Sobic010G018300--Sobic001G146400 Sobic010G018300--Sobic009G067400 Sobic010G018300--Sobic001G146500 Sobic001G259500 Sobic001G259500 Sobic010G018300--Sobic001G259500 Sobic001G146400--Sobic010G018300 Sobic001G146400--Sobic002G386200 Sobic002G199500 Sobic002G199500 Sobic001G146400--Sobic002G199500 Sobic004G169900 Sobic004G169900 Sobic001G146400--Sobic004G169900 Sobic001G146400--Sobic001G146500 Sobic001G146400--Sobic009G067400 Sobic001G146400--Sobic001G381300 Sobic010G163150 Sobic010G163150 Sobic001G146400--Sobic010G163150 Sobic001G146400--Sobic009G121600 Sobic009G216050--Sobic004G209500 Sobic006G045000 Sobic006G045000 Sobic009G216050--Sobic006G045000 Sobic009G216050--Sobic009G067400 Sobic009G216050--Sobic004G101000 Sobic004G217700 Sobic004G217700 Sobic009G216050--Sobic004G217700 Sobic004G174000 Sobic004G174000 Sobic009G216050--Sobic004G174000 SobicK044407 SobicK044407 Sobic009G216050--SobicK044407 Sobic009G216050--Sobic002G407200 Sobic009G216050--Sobic008G181801
Octagon: transcription factors


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