Gene annotation
Transcriptome id Sobic.007G006501.1
Synonym -
Functional annotation -
UniProt A0A1B6PET2
Pfam PF00704 PF00069
Panther DB PTHR27009 PTHR27009:SF16
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology K01183; chitinase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G38280 : PR5-like receptor kinase
RAP-DB (Rice) LOC_Os01g49580.1 : Protein kinase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026760
Brachypodium PNT72617 , KQK10704 , KQK10702 , KQK09288 , KQK09287
Barley HORVU3Hr1G083670.2
Wheat TraesCS3A02G261700 , TraesCS3B02G294900 , TraesCS3D02G261700
Populus PNT28552 , PNT28540 , PNT28539


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G031001 - -
2 Sobic.003G314200 TKL_IRAK_DUF26-lc.7 - DUF26 kinases have homology to DUF26 containing loci, expressed -
3 Sobic.010G276850 - -
4 Sobic.001G490200 nucleoside-triphosphatase, putative, expressed -
5 Sobic.001G413300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
6 Sobic.002G425400 - -
7 Sobic.004G073300 multidrug resistance protein, putative, expressed -
8 Sobic.004G169401 - -
9 Sobic.008G068700 DUF1336 domain containing protein, expressed -
10 Sobic.009G027200 tetraspanin family protein, putative, expressed -
11 Sobic.010G094200 - -
12 Sobic.001G197200 expressed protein -
13 Sobic.004G176950 - -
14 Sobic.001G148000 a WRKY transcription factor which regulates cell wall biosynthesis genes. Seed shattering-related gene.(PubMedID : 24019506)@WRKY60, expressed -
15 Sobic.002G348850 - -
16 Sobic.002G314100 dimethyladenosine transferase, putative, expressed K14191: 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase
17 Sobic.009G161700 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@COX VIIa, putative, expressed -
18 Sobic.002G245700 slowmo homolog, putative, expressed -
19 Sobic.008G020350 - -
20 Sobic.009G218700 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic007G006501 Sobic007G006501 Sobic003G031001 Sobic003G031001 Sobic007G006501--Sobic003G031001 Sobic003G314200 Sobic003G314200 Sobic007G006501--Sobic003G314200 Sobic010G276850 Sobic010G276850 Sobic007G006501--Sobic010G276850 Sobic001G490200 Sobic001G490200 Sobic007G006501--Sobic001G490200 Sobic001G413300 Sobic001G413300 Sobic007G006501--Sobic001G413300 Sobic002G425400 Sobic002G425400 Sobic007G006501--Sobic002G425400 Sobic004G073300 Sobic004G073300 Sobic007G006501--Sobic004G073300 Sobic004G169401 Sobic004G169401 Sobic007G006501--Sobic004G169401 Sobic008G068700 Sobic008G068700 Sobic007G006501--Sobic008G068700 Sobic003G031001--Sobic010G276850 Sobic003G031001--Sobic001G413300 Sobic004G088800 Sobic004G088800 Sobic003G031001--Sobic004G088800 Sobic001G038050 Sobic001G038050 Sobic003G031001--Sobic001G038050 Sobic010G122300 Sobic010G122300 Sobic003G031001--Sobic010G122300 Sobic003G031001--Sobic004G073300 Sobic003G031001--Sobic008G068700 Sobic002G423901 Sobic002G423901 Sobic003G031001--Sobic002G423901 Sobic009G218700 Sobic009G218700 Sobic003G031001--Sobic009G218700 Sobic008G040800 Sobic008G040800 Sobic003G314200--Sobic008G040800 Sobic006G205800 Sobic006G205800 Sobic003G314200--Sobic006G205800 Sobic006G094800 Sobic006G094800 Sobic003G314200--Sobic006G094800 Sobic001G148000 Sobic001G148000 Sobic003G314200--Sobic001G148000 Sobic003G226600 Sobic003G226600 Sobic003G314200--Sobic003G226600 Sobic009G027200 Sobic009G027200 Sobic003G314200--Sobic009G027200 Sobic001G207301 Sobic001G207301 Sobic003G314200--Sobic001G207301 Sobic001G501701 Sobic001G501701 Sobic003G314200--Sobic001G501701 Sobic004G338200 Sobic004G338200 Sobic003G314200--Sobic004G338200 Sobic010G091250 Sobic010G091250 Sobic010G276850--Sobic010G091250 Sobic010G094200 Sobic010G094200 Sobic010G276850--Sobic010G094200 Sobic010G276850--Sobic001G038050 Sobic010G276850--Sobic004G073300 Sobic010G276850--Sobic003G031001 Sobic002G314100 Sobic002G314100 Sobic010G276850--Sobic002G314100 Sobic010G276850--Sobic008G068700 Sobic004G193100 Sobic004G193100 Sobic010G276850--Sobic004G193100 Sobic003G388601 Sobic003G388601 Sobic010G276850--Sobic003G388601 Sobic001G490200--Sobic002G423901 Sobic002G288700 Sobic002G288700 Sobic001G490200--Sobic002G288700 Sobic004G116900 Sobic004G116900 Sobic001G490200--Sobic004G116900 Sobic007G223250 Sobic007G223250 Sobic001G490200--Sobic007G223250 Sobic001G060732 Sobic001G060732 Sobic001G490200--Sobic001G060732 Sobic001G150901 Sobic001G150901 Sobic001G490200--Sobic001G150901 Sobic001G059150 Sobic001G059150 Sobic001G490200--Sobic001G059150 Sobic001G234733 Sobic001G234733 Sobic001G490200--Sobic001G234733 Sobic010G008433 Sobic010G008433 Sobic001G490200--Sobic010G008433 Sobic003G208200 Sobic003G208200 Sobic001G413300--Sobic003G208200 Sobic003G351501 Sobic003G351501 Sobic001G413300--Sobic003G351501 Sobic003G169700 Sobic003G169700 Sobic001G413300--Sobic003G169700 Sobic007G085400 Sobic007G085400 Sobic001G413300--Sobic007G085400 Sobic002G033550 Sobic002G033550 Sobic001G413300--Sobic002G033550 Sobic001G224500 Sobic001G224500 Sobic001G413300--Sobic001G224500 Sobic001G373850 Sobic001G373850 Sobic001G413300--Sobic001G373850 Sobic002G245700 Sobic002G245700 Sobic001G413300--Sobic002G245700 Sobic003G161900 Sobic003G161900 Sobic001G413300--Sobic003G161900 Sobic001G524150 Sobic001G524150 Sobic002G425400--Sobic001G524150 Sobic007G011100 Sobic007G011100 Sobic002G425400--Sobic007G011100 Sobic009G058900 Sobic009G058900 Sobic002G425400--Sobic009G058900 Sobic002G425400--Sobic010G276850 Sobic002G425400--Sobic001G150901 Sobic002G425400--Sobic004G073300 Sobic001G323101 Sobic001G323101 Sobic002G425400--Sobic001G323101 Sobic006G258100 Sobic006G258100 Sobic002G425400--Sobic006G258100 Sobic007G054200 Sobic007G054200 Sobic002G425400--Sobic007G054200 Sobic004G073300--Sobic010G276850 Sobic004G073300--Sobic007G011100 Sobic004G073300--Sobic010G091250 Sobic002G419550 Sobic002G419550 Sobic004G073300--Sobic002G419550 Sobic006G263250 Sobic006G263250 Sobic004G073300--Sobic006G263250 Sobic004G073300--Sobic004G193100 Sobic001G136850 Sobic001G136850 Sobic004G073300--Sobic001G136850 Sobic004G073300--Sobic002G314100 Sobic004G073300--Sobic009G058900 Sobic004G169401--Sobic002G245700 Sobic007G199901 Sobic007G199901 Sobic004G169401--Sobic007G199901 Sobic007G023000 Sobic007G023000 Sobic004G169401--Sobic007G023000 Sobic004G169401--Sobic001G413300 Sobic004G169401--Sobic003G208200 Sobic008G129500 Sobic008G129500 Sobic004G169401--Sobic008G129500 Sobic004G169401--Sobic001G224500 Sobic004G169401--Sobic003G351501 Sobic004G169401--Sobic001G373850 Sobic001G273875 Sobic001G273875 Sobic008G068700--Sobic001G273875 Sobic001G529100 Sobic001G529100 Sobic008G068700--Sobic001G529100 Sobic004G201000 Sobic004G201000 Sobic008G068700--Sobic004G201000 Sobic006G011450 Sobic006G011450 Sobic008G068700--Sobic006G011450 Sobic008G068700--Sobic010G276850 Sobic010G155401 Sobic010G155401 Sobic008G068700--Sobic010G155401 Sobic004G065950 Sobic004G065950 Sobic008G068700--Sobic004G065950 Sobic008G068700--Sobic001G038050 Sobic003G125751 Sobic003G125751 Sobic008G068700--Sobic003G125751
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.