Gene annotation
Transcriptome id Sobic.007G165000.1
Synonym
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6PI55
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF113
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G43420 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g57460.1 : RING-H2 finger protein ATL5G, putative, expressed
MaizeGDB (Corn) Zm00025a000667 , Zm00025a000669 , Zm00025a005551
Brachypodium PNT66465
Barley HORVU4Hr1G080250.1 , HORVU7Hr1G052460.1 , HORVU7Hr1G052460.2 , HORVU7Hr1G052460.3 , HORVU4Hr1G080280.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G009450 - -
2 Sobic.001G288900 -(PubMedID : 26976818)@mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
3 Sobic.001G270200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
4 Sobic.001G044100 Up-reguralion under heat(PubMedID : 24916767)@cytochrome P450, putative, expressed -
5 Sobic.010G088400 phosphate-induced protein 1 conserved region domain containing protein, expressed -
6 Sobic.001G015600 expressed protein -
7 Sobic.006G240650 - -
8 Sobic.004G133301 - -
9 Sobic.003G125000 serpin domain containing protein, putative, expressed K13963: serpin B
10 Sobic.001G039000 DUF567 domain containing protein, putative, expressed -
11 Sobic.005G213700 hydrolase, alpha/beta fold family domain containing protein, expressed -
12 Sobic.005G161500 cytochrome P450, putative, expressed K05917: sterol 14alpha-demethylase
13 Sobic.001G364200 cytochrome P450, putative, expressed -
14 Sobic.003G161950 - -
15 Sobic.001G393600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plant protein of unknown function domain containing protein, expressed -
16 Sobic.010G132000 arabinogalactan peptide 23 precursor, putative, expressed -
17 Sobic.002G156700 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.005G019900 expressed protein -
19 Sobic.001G427600 ZOS3-08 - C2H2 zinc finger protein, expressed -
20 Sobic.003G039100 expressed protein -


Gene co-expression network
sample Sobic007G165000 Sobic007G165000 Sobic008G009450 Sobic008G009450 Sobic007G165000--Sobic008G009450 Sobic001G288900 Sobic001G288900 Sobic007G165000--Sobic001G288900 Sobic001G270200 Sobic001G270200 Sobic007G165000--Sobic001G270200 Sobic001G044100 Sobic001G044100 Sobic007G165000--Sobic001G044100 Sobic010G088400 Sobic010G088400 Sobic007G165000--Sobic010G088400 Sobic001G015600 Sobic001G015600 Sobic007G165000--Sobic001G015600 Sobic006G240650 Sobic006G240650 Sobic007G165000--Sobic006G240650 Sobic004G133301 Sobic004G133301 Sobic007G165000--Sobic004G133301 Sobic003G125000 Sobic003G125000 Sobic007G165000--Sobic003G125000 Sobic008G009450--Sobic001G044100 Sobic008G009450--Sobic007G165000 Sobic008G009450--Sobic001G015600 Sobic008G009450--Sobic001G270200 Sobic008G009450--Sobic010G088400 Sobic003G161950 Sobic003G161950 Sobic008G009450--Sobic003G161950 Sobic001G393600 Sobic001G393600 Sobic008G009450--Sobic001G393600 Sobic008G009450--Sobic004G133301 Sobic001G364200 Sobic001G364200 Sobic008G009450--Sobic001G364200 Sobic001G288900--Sobic007G165000 Sobic010G132000 Sobic010G132000 Sobic001G288900--Sobic010G132000 Sobic001G039000 Sobic001G039000 Sobic001G288900--Sobic001G039000 Sobic001G288900--Sobic001G270200 Sobic010G271501 Sobic010G271501 Sobic001G288900--Sobic010G271501 Sobic001G288900--Sobic008G009450 Sobic001G288900--Sobic006G240650 Sobic003G258600 Sobic003G258600 Sobic001G288900--Sobic003G258600 Sobic001G288900--Sobic001G044100 Sobic001G270200--Sobic007G165000 Sobic001G270200--Sobic001G044100 Sobic001G270200--Sobic008G009450 Sobic001G270200--Sobic001G364200 Sobic001G270200--Sobic003G125000 Sobic001G270200--Sobic001G393600 Sobic001G270200--Sobic004G133301 Sobic004G072400 Sobic004G072400 Sobic001G270200--Sobic004G072400 Sobic001G270200--Sobic010G088400 Sobic001G044100--Sobic008G009450 Sobic001G044100--Sobic010G088400 Sobic001G044100--Sobic001G015600 Sobic001G044100--Sobic001G393600 Sobic002G156700 Sobic002G156700 Sobic001G044100--Sobic002G156700 Sobic005G183000 Sobic005G183000 Sobic001G044100--Sobic005G183000 Sobic001G044100--Sobic001G270200 Sobic001G044100--Sobic007G165000 Sobic001G044100--Sobic001G364200 Sobic010G088400--Sobic001G044100 Sobic010G088400--Sobic008G009450 Sobic010G088400--Sobic001G015600 Sobic010G088400--Sobic007G165000 Sobic005G019900 Sobic005G019900 Sobic010G088400--Sobic005G019900 Sobic010G088400--Sobic002G156700 Sobic010G088400--Sobic001G270200 Sobic010G088400--Sobic005G183000 Sobic002G407500 Sobic002G407500 Sobic010G088400--Sobic002G407500 Sobic001G015600--Sobic001G044100 Sobic001G015600--Sobic008G009450 Sobic002G237500 Sobic002G237500 Sobic001G015600--Sobic002G237500 Sobic001G015600--Sobic010G088400 Sobic009G237900 Sobic009G237900 Sobic001G015600--Sobic009G237900 Sobic006G138700 Sobic006G138700 Sobic001G015600--Sobic006G138700 Sobic006G077100 Sobic006G077100 Sobic001G015600--Sobic006G077100 Sobic001G015600--Sobic007G165000 Sobic009G258700 Sobic009G258700 Sobic001G015600--Sobic009G258700 Sobic006G240650--Sobic008G009450 Sobic006G240650--Sobic007G165000 Sobic006G240650--Sobic001G288900 Sobic006G240650--Sobic001G270200 Sobic006G240650--Sobic003G161950 Sobic006G240650--Sobic001G364200 Sobic006G240650--Sobic001G044100 Sobic006G240650--Sobic004G133301 Sobic005G161500 Sobic005G161500 Sobic006G240650--Sobic005G161500 Sobic004G133301--Sobic001G393600 Sobic004G133301--Sobic001G364200 Sobic004G133301--Sobic002G156700 Sobic002G252600 Sobic002G252600 Sobic004G133301--Sobic002G252600 Sobic005G190700 Sobic005G190700 Sobic004G133301--Sobic005G190700 Sobic004G133301--Sobic001G044100 Sobic004G133301--Sobic005G019900 Sobic002G070400 Sobic002G070400 Sobic004G133301--Sobic002G070400 Sobic003G407400 Sobic003G407400 Sobic004G133301--Sobic003G407400 Sobic003G125000--Sobic001G270200 Sobic001G160400 Sobic001G160400 Sobic003G125000--Sobic001G160400 Sobic001G272700 Sobic001G272700 Sobic003G125000--Sobic001G272700 Sobic003G125000--Sobic004G072400 Sobic003G125000--Sobic005G161500 Sobic006G092200 Sobic006G092200 Sobic003G125000--Sobic006G092200 Sobic003G125000--Sobic007G165000 Sobic001G303600 Sobic001G303600 Sobic003G125000--Sobic001G303600 Sobic003G125000--Sobic001G288900
Octagon: transcription factors


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