Gene annotation
Transcriptome id Sobic.003G125000.3,Sobic.003G125000.2
Synonym Sb03g010570
Functional annotation serpin domain containing protein, putative, expressed
UniProt A0A1W0VX10
Pfam PF00079
Panther DB PTHR11461 PTHR11461:SF190
NCBI CDD KOG2392; Serpin
KEGG Orthology K13963; serpin B
Gene Ontology GO:0005615; extracellular space


Orthologs (automatic annotation)
TAIR AT1G47710 : Serine protease inhibitor (SERPIN) family protein
RAP-DB (Rice) LOC_Os01g16200.1 : serpin domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a024009 , Zm00025a035255
Brachypodium PNT63972
Barley HORVU6Hr1G008840.1 , HORVU6Hr1G008840.2 , HORVU1Hr1G071460.1
Wheat TraesCS6A02G124400 , TraesCS6D02G114700 , TraesCS6B02G152500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G270200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
2 Sobic.001G160400 integral membrane protein DUF6 containing protein, expressed -
3 Sobic.001G272700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.004G072400 GDSL-like lipase/acylhydrolase, putative, expressed -
5 Sobic.005G161500 cytochrome P450, putative, expressed K05917: sterol 14alpha-demethylase
6 Sobic.006G092200 RING-H2 finger protein ATL3F, putative, expressed K16286: E3 ubiquitin-protein ligase EL5
7 Sobic.007G165000 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.001G303600 respiratory burst oxidase protein B, putative, expressed -
9 Sobic.001G288900 -(PubMedID : 26976818)@mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
10 Sobic.001G479600 B3 DNA binding domain containing protein, expressed -
11 Sobic.006G273300 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
12 Sobic.001G357700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed -
13 Sobic.003G405200 regulatory protein, putative, expressed -
14 Sobic.004G233900 CRAL/TRIO domain containing protein, expressed -
15 Sobic.009G160800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
16 Sobic.005G213700 hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.001G058000 - -
18 Sobic.008G009450 - -
19 Sobic.010G271501 - -
20 Sobic.003G256500 heavy metal-associated domain containing protein, expressed -


Gene co-expression network
sample Sobic003G125000 Sobic003G125000 Sobic001G270200 Sobic001G270200 Sobic003G125000--Sobic001G270200 Sobic001G160400 Sobic001G160400 Sobic003G125000--Sobic001G160400 Sobic001G272700 Sobic001G272700 Sobic003G125000--Sobic001G272700 Sobic004G072400 Sobic004G072400 Sobic003G125000--Sobic004G072400 Sobic005G161500 Sobic005G161500 Sobic003G125000--Sobic005G161500 Sobic006G092200 Sobic006G092200 Sobic003G125000--Sobic006G092200 Sobic007G165000 Sobic007G165000 Sobic003G125000--Sobic007G165000 Sobic001G303600 Sobic001G303600 Sobic003G125000--Sobic001G303600 Sobic001G288900 Sobic001G288900 Sobic003G125000--Sobic001G288900 Sobic001G270200--Sobic007G165000 Sobic001G044100 Sobic001G044100 Sobic001G270200--Sobic001G044100 Sobic008G009450 Sobic008G009450 Sobic001G270200--Sobic008G009450 Sobic001G364200 Sobic001G364200 Sobic001G270200--Sobic001G364200 Sobic001G270200--Sobic003G125000 Sobic001G393600 Sobic001G393600 Sobic001G270200--Sobic001G393600 Sobic004G133301 Sobic004G133301 Sobic001G270200--Sobic004G133301 Sobic001G270200--Sobic004G072400 Sobic010G088400 Sobic010G088400 Sobic001G270200--Sobic010G088400 Sobic001G160400--Sobic001G303600 Sobic004G101100 Sobic004G101100 Sobic001G160400--Sobic004G101100 Sobic001G160400--Sobic004G072400 Sobic001G392000 Sobic001G392000 Sobic001G160400--Sobic001G392000 Sobic006G057300 Sobic006G057300 Sobic001G160400--Sobic006G057300 Sobic001G160400--Sobic003G125000 Sobic008G010700 Sobic008G010700 Sobic001G160400--Sobic008G010700 Sobic006G194700 Sobic006G194700 Sobic001G160400--Sobic006G194700 Sobic001G058000 Sobic001G058000 Sobic001G160400--Sobic001G058000 Sobic004G202400 Sobic004G202400 Sobic001G272700--Sobic004G202400 Sobic008G172600 Sobic008G172600 Sobic001G272700--Sobic008G172600 Sobic003G255500 Sobic003G255500 Sobic001G272700--Sobic003G255500 Sobic004G046200 Sobic004G046200 Sobic001G272700--Sobic004G046200 Sobic010G063000 Sobic010G063000 Sobic001G272700--Sobic010G063000 Sobic006G197100 Sobic006G197100 Sobic001G272700--Sobic006G197100 Sobic003G255200 Sobic003G255200 Sobic001G272700--Sobic003G255200 Sobic001G325400 Sobic001G325400 Sobic001G272700--Sobic001G325400 Sobic004G042000 Sobic004G042000 Sobic001G272700--Sobic004G042000 Sobic009G133100 Sobic009G133100 Sobic004G072400--Sobic009G133100 Sobic004G072400--Sobic001G058000 Sobic004G072400--Sobic001G364200 Sobic007G131300 Sobic007G131300 Sobic004G072400--Sobic007G131300 Sobic008G055650 Sobic008G055650 Sobic004G072400--Sobic008G055650 Sobic004G072400--Sobic004G101100 Sobic005G050900 Sobic005G050900 Sobic004G072400--Sobic005G050900 Sobic004G072400--Sobic001G392000 Sobic004G233900 Sobic004G233900 Sobic004G072400--Sobic004G233900 Sobic005G161500--Sobic001G270200 Sobic005G161500--Sobic004G072400 Sobic005G161500--Sobic003G125000 Sobic005G161500--Sobic001G044100 Sobic005G161500--Sobic001G364200 Sobic005G161500--Sobic009G133100 Sobic010G078000 Sobic010G078000 Sobic005G161500--Sobic010G078000 Sobic005G161500--Sobic001G058000 Sobic005G161500--Sobic007G165000 Sobic006G273300 Sobic006G273300 Sobic006G092200--Sobic006G273300 Sobic004G227800 Sobic004G227800 Sobic006G092200--Sobic004G227800 Sobic006G256900 Sobic006G256900 Sobic006G092200--Sobic006G256900 Sobic009G160800 Sobic009G160800 Sobic006G092200--Sobic009G160800 Sobic001G237800 Sobic001G237800 Sobic006G092200--Sobic001G237800 Sobic009G219200 Sobic009G219200 Sobic006G092200--Sobic009G219200 Sobic003G140700 Sobic003G140700 Sobic006G092200--Sobic003G140700 Sobic001G238200 Sobic001G238200 Sobic006G092200--Sobic001G238200 Sobic001G438200 Sobic001G438200 Sobic006G092200--Sobic001G438200 Sobic007G165000--Sobic008G009450 Sobic007G165000--Sobic001G288900 Sobic007G165000--Sobic001G270200 Sobic007G165000--Sobic001G044100 Sobic007G165000--Sobic010G088400 Sobic001G015600 Sobic001G015600 Sobic007G165000--Sobic001G015600 Sobic006G240650 Sobic006G240650 Sobic007G165000--Sobic006G240650 Sobic007G165000--Sobic004G133301 Sobic007G165000--Sobic003G125000 Sobic001G303600--Sobic001G392000 Sobic001G303600--Sobic001G160400 Sobic004G126200 Sobic004G126200 Sobic001G303600--Sobic004G126200 Sobic001G303600--Sobic008G010700 Sobic003G270000 Sobic003G270000 Sobic001G303600--Sobic003G270000 Sobic005G205550 Sobic005G205550 Sobic001G303600--Sobic005G205550 Sobic004G012200 Sobic004G012200 Sobic001G303600--Sobic004G012200 Sobic003G238200 Sobic003G238200 Sobic001G303600--Sobic003G238200 Sobic005G154800 Sobic005G154800 Sobic001G303600--Sobic005G154800 Sobic001G288900--Sobic007G165000 Sobic010G132000 Sobic010G132000 Sobic001G288900--Sobic010G132000 Sobic001G039000 Sobic001G039000 Sobic001G288900--Sobic001G039000 Sobic001G288900--Sobic001G270200 Sobic010G271501 Sobic010G271501 Sobic001G288900--Sobic010G271501 Sobic001G288900--Sobic008G009450 Sobic001G288900--Sobic006G240650 Sobic003G258600 Sobic003G258600 Sobic001G288900--Sobic003G258600 Sobic001G288900--Sobic001G044100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.