Gene annotation
Transcriptome id Sobic.001G160400.1
Synonym Sb01g014010
Functional annotation integral membrane protein DUF6 containing protein, expressed
UniProt C5WS40
Pfam PF00892
Panther DB PTHR31218 PTHR31218:SF70
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT5G64700 : nodulin MtN21 /EamA-like transporter family protein
RAP-DB (Rice) LOC_Os12g33300.1 : integral membrane protein DUF6 containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G303600 respiratory burst oxidase protein B, putative, expressed -
2 Sobic.004G101100 STIGL3 - Stigma-specific Stig1 family protein precursor, putative, expressed -
3 Sobic.004G072400 GDSL-like lipase/acylhydrolase, putative, expressed -
4 Sobic.001G392000 WD40-like Beta Propeller Repeat family protein, expressed -
5 Sobic.006G057300 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@leucoanthocyanidin dioxygenase, putative, expressed -
6 Sobic.003G125000 serpin domain containing protein, putative, expressed K13963: serpin B
7 Sobic.008G010700 RGH1A, putative, expressed -
8 Sobic.006G194700 zinc finger, C3HC4 type domain containing protein, expressed K10663: E3 ubiquitin-protein ligase ATL4
9 Sobic.001G058000 - -
10 Sobic.009G133100 cytochrome P450 72A1, putative, expressed -
11 Sobic.004G156100 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.005G123000 gibberellin response modulator protein, putative, expressed -
13 Sobic.005G205550 - -
14 Sobic.004G012200 phytosulfokine receptor precursor, putative, expressed -
15 Sobic.003G152050 - -
16 Sobic.009G028700 OsFBX115 - F-box domain containing protein, expressed -
17 Sobic.003G187800 desaturase/cytochrome b5 protein, putative, expressed K13076: sphingolipid 8-(E)-desaturase
18 Sobic.004G126200 expressed protein -
19 Sobic.004G233900 CRAL/TRIO domain containing protein, expressed -
20 Sobic.006G246800 MBTB56 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein


Gene co-expression network
sample Sobic001G160400 Sobic001G160400 Sobic001G303600 Sobic001G303600 Sobic001G160400--Sobic001G303600 Sobic004G101100 Sobic004G101100 Sobic001G160400--Sobic004G101100 Sobic004G072400 Sobic004G072400 Sobic001G160400--Sobic004G072400 Sobic001G392000 Sobic001G392000 Sobic001G160400--Sobic001G392000 Sobic006G057300 Sobic006G057300 Sobic001G160400--Sobic006G057300 Sobic003G125000 Sobic003G125000 Sobic001G160400--Sobic003G125000 Sobic008G010700 Sobic008G010700 Sobic001G160400--Sobic008G010700 Sobic006G194700 Sobic006G194700 Sobic001G160400--Sobic006G194700 Sobic001G058000 Sobic001G058000 Sobic001G160400--Sobic001G058000 Sobic001G303600--Sobic001G392000 Sobic001G303600--Sobic001G160400 Sobic004G126200 Sobic004G126200 Sobic001G303600--Sobic004G126200 Sobic001G303600--Sobic008G010700 Sobic003G270000 Sobic003G270000 Sobic001G303600--Sobic003G270000 Sobic005G205550 Sobic005G205550 Sobic001G303600--Sobic005G205550 Sobic004G012200 Sobic004G012200 Sobic001G303600--Sobic004G012200 Sobic003G238200 Sobic003G238200 Sobic001G303600--Sobic003G238200 Sobic005G154800 Sobic005G154800 Sobic001G303600--Sobic005G154800 Sobic004G101100--Sobic006G057300 Sobic004G101100--Sobic006G194700 Sobic004G101100--Sobic004G072400 Sobic004G233900 Sobic004G233900 Sobic004G101100--Sobic004G233900 Sobic009G133100 Sobic009G133100 Sobic004G101100--Sobic009G133100 Sobic004G101100--Sobic001G160400 Sobic004G101100--Sobic001G058000 Sobic004G101100--Sobic008G010700 Sobic002G122900 Sobic002G122900 Sobic004G101100--Sobic002G122900 Sobic004G072400--Sobic009G133100 Sobic004G072400--Sobic001G058000 Sobic001G364200 Sobic001G364200 Sobic004G072400--Sobic001G364200 Sobic007G131300 Sobic007G131300 Sobic004G072400--Sobic007G131300 Sobic008G055650 Sobic008G055650 Sobic004G072400--Sobic008G055650 Sobic004G072400--Sobic004G101100 Sobic005G050900 Sobic005G050900 Sobic004G072400--Sobic005G050900 Sobic004G072400--Sobic001G392000 Sobic004G072400--Sobic004G233900 Sobic001G392000--Sobic001G303600 Sobic004G156100 Sobic004G156100 Sobic001G392000--Sobic004G156100 Sobic001G392000--Sobic003G270000 Sobic001G392000--Sobic004G072400 Sobic001G392000--Sobic008G010700 Sobic001G392000--Sobic005G205550 Sobic001G392000--Sobic007G131300 Sobic001G392000--Sobic009G133100 Sobic001G392000--Sobic004G126200 Sobic006G057300--Sobic002G122900 Sobic006G057300--Sobic004G101100 Sobic001G285700 Sobic001G285700 Sobic006G057300--Sobic001G285700 Sobic006G035950 Sobic006G035950 Sobic006G057300--Sobic006G035950 Sobic001G121000 Sobic001G121000 Sobic006G057300--Sobic001G121000 Sobic006G246800 Sobic006G246800 Sobic006G057300--Sobic006G246800 Sobic004G355101 Sobic004G355101 Sobic006G057300--Sobic004G355101 Sobic010G228300 Sobic010G228300 Sobic006G057300--Sobic010G228300 Sobic007G215300 Sobic007G215300 Sobic006G057300--Sobic007G215300 Sobic001G270200 Sobic001G270200 Sobic003G125000--Sobic001G270200 Sobic003G125000--Sobic001G160400 Sobic001G272700 Sobic001G272700 Sobic003G125000--Sobic001G272700 Sobic003G125000--Sobic004G072400 Sobic005G161500 Sobic005G161500 Sobic003G125000--Sobic005G161500 Sobic006G092200 Sobic006G092200 Sobic003G125000--Sobic006G092200 Sobic007G165000 Sobic007G165000 Sobic003G125000--Sobic007G165000 Sobic003G125000--Sobic001G303600 Sobic001G288900 Sobic001G288900 Sobic003G125000--Sobic001G288900 Sobic008G010700--Sobic001G392000 Sobic008G010700--Sobic001G303600 Sobic008G010700--Sobic004G072400 Sobic008G010700--Sobic004G126200 Sobic008G010700--Sobic004G101100 Sobic008G010700--Sobic001G160400 Sobic008G010700--Sobic003G238200 Sobic008G010700--Sobic004G012200 Sobic005G219900 Sobic005G219900 Sobic008G010700--Sobic005G219900 Sobic006G194700--Sobic004G101100 Sobic006G194700--Sobic004G072400 Sobic006G194700--Sobic001G392000 Sobic006G194700--Sobic001G058000 Sobic006G194700--Sobic001G160400 Sobic006G194700--Sobic004G233900 Sobic006G069400 Sobic006G069400 Sobic006G194700--Sobic006G069400 Sobic006G194700--Sobic008G010700 Sobic005G005800 Sobic005G005800 Sobic006G194700--Sobic005G005800 Sobic001G058000--Sobic004G072400 Sobic001G058000--Sobic009G133100 Sobic001G058000--Sobic004G233900 Sobic001G058000--Sobic001G364200 Sobic009G190900 Sobic009G190900 Sobic001G058000--Sobic009G190900 Sobic001G058000--Sobic005G050900 Sobic001G058000--Sobic004G101100 Sobic001G058000--Sobic007G131300 Sobic001G058000--Sobic005G005800
Octagon: transcription factors


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